Effective results for Corynebacterium accolens ATCC 49725 (eggnog40)

Summary

Number of putative secreted proteins: 29
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 29 proteins (3 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
525260.HMPREF0276_0973				(PF08310)	(mitochondrial)
525260.HMPREF0276_0169				(PF08310)	ER; (ER)
525260.HMPREF0276_2316				(PF13276)	(mitochondrial)
525260.HMPREF0276_2331				(PF13683)	(mitochondrial)
525260.HMPREF0276_0499				(PF08310)	(ER); ER
525260.HMPREF0276_0519				(PF13276)	(mitochondrial)
525260.HMPREF0276_0986				(PF13276)	mitochondrial
525260.HMPREF0276_0895				(PF03803)	(plastid)
525260.HMPREF0276_0130				(PF01195)	(plastid)
525260.HMPREF0276_2328				(PF13276)	(mitochondrial)
525260.HMPREF0276_0532				(PF13276)	(mitochondrial)
525260.HMPREF0276_1148				PF08213	not used
525260.HMPREF0276_0727				(PF13683)
525260.HMPREF0276_0899				(PF05495)
525260.HMPREF0276_0945				PF01490
525260.HMPREF0276_0374				(PF13683)
525260.HMPREF0276_0373				(PF13276)
525260.HMPREF0276_1569				(PF13276)
525260.HMPREF0276_1187				(PF13683)
525260.HMPREF0276_0487				(PF08310)
525260.HMPREF0276_2330				(PF13276)
525260.HMPREF0276_1010				(PF13683)
525260.HMPREF0276_0120				(PF01195)
525260.HMPREF0276_2323				(PF13683)
525260.HMPREF0276_2320				(PF13276)
525260.HMPREF0276_0035				(PF11070)
525260.HMPREF0276_2125				(PF13683)
525260.HMPREF0276_1113				(PF13276)
525260.HMPREF0276_0952				PF01490

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================