Metamenu

Effective results for Leptotrichia buccalis C-1013-b (eggnog40)

Summary

Number of putative secreted proteins: 25
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 25 proteins (4 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
523794.Lebu_2261(PF05704)(mitochondrial)
523794.Lebu_0775(PF09511)mitochondrial
523794.Lebu_0560(PF03083)ER
523794.Lebu_0006(PF12138)ER
523794.Lebu_0926(PF01535)ER
523794.Lebu_1427(PF06736)ER
523794.Lebu_1424(PF06736)ER
523794.Lebu_1429(PF06736)ER
523794.Lebu_0315PF12327
523794.Lebu_0755(PF01991)
523794.Lebu_1822(PF09820)
523794.Lebu_1489(PF09820)
523794.Lebu_0945(PF09820)
523794.Lebu_1380(PF09820)
523794.Lebu_0003(PF09820)
523794.Lebu_1027(PF01025)
523794.Lebu_1196PF12327
523794.Lebu_0829(PF13151)
523794.Lebu_0783(PF01025)
523794.Lebu_0209PF12327
523794.Lebu_0474(PF12138)
523794.Lebu_0475(PF03083)
523794.Lebu_0888(PF09820)
523794.Lebu_1328PF12327
523794.Lebu_2222(PF01025)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================