Metamenu

Effective results for Tsukamurella paurometabola DSM 20162 (eggnog40)

Summary

Number of putative secreted proteins: 86
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 86 proteins (1 high, 85 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
521096.Tpau_1317(PF08326)mitochondrial; (mitochondrial)
521096.Tpau_0316(PF08310)ER
521096.Tpau_2269(PF08310)(ER)
521096.Tpau_1533(PF09995)mitochondrial
521096.Tpau_0168(PF08310)ER
521096.Tpau_0160(PF08310)(mitochondrial)
521096.Tpau_1540(PF13936) (PF00665)
521096.Tpau_2955(PF13936) (PF00665)
521096.Tpau_1947(PF13936) (PF00665)
521096.Tpau_1016(PF08310)(ER)
521096.Tpau_1134(PF13936) (PF00665)
521096.Tpau_2565(PF08310)(ER)
521096.Tpau_1842(PF13936) (PF00665)
521096.Tpau_4180(PF09995)(plastid)
521096.Tpau_4088(PF13936) (PF00665)
521096.Tpau_3879(PF13936) (PF00665)
521096.Tpau_2697(PF13936) (PF00665)
521096.Tpau_1346(PF09995)(plastid)
521096.Tpau_4055(PF13936) (PF00665)
521096.Tpau_3459(PF13936) (PF00665)
521096.Tpau_3129(PF03405)
521096.Tpau_2705(PF01527)
521096.Tpau_2706(PF00665)
521096.Tpau_0385(PF01527)
521096.Tpau_0384(PF00665)
521096.Tpau_3134(PF09995)
521096.Tpau_3958(PF00665)
521096.Tpau_3957(PF01527)
521096.Tpau_3955(PF00665)
521096.Tpau_3954(PF01527)
521096.Tpau_2607(PF01527)
521096.Tpau_3733(PF09348)
521096.Tpau_1486(PF01527)
521096.Tpau_1485(PF00665)
521096.Tpau_1003(PF01527)
521096.Tpau_1004(PF00665)
521096.Tpau_0267(PF01527)
521096.Tpau_0268(PF00665)
521096.Tpau_0662PF08213not used
521096.Tpau_0273(PF01527)
521096.Tpau_0272(PF00665)
521096.Tpau_0277(PF00665)
521096.Tpau_0276(PF01527)
521096.Tpau_0279(PF00665)
521096.Tpau_0278(PF01527)
521096.Tpau_3218(PF00665)
521096.Tpau_3219(PF01527)
521096.Tpau_2139(PF00454)
521096.Tpau_1024(PF00665)
521096.Tpau_4188(PF09995)
521096.Tpau_0255(PF01527)
521096.Tpau_0254(PF00665)
521096.Tpau_4085(PF09995)
521096.Tpau_1315(PF08354)
521096.Tpau_0224(PF07929)
521096.Tpau_2933(PF08975)
521096.Tpau_3535(PF03405)
521096.Tpau_3536(PF03405)
521096.Tpau_3229(PF07929)
521096.Tpau_1868(PF07929)
521096.Tpau_2252(PF09995)
521096.Tpau_2473(PF00665)
521096.Tpau_2472(PF01527)
521096.Tpau_0231(PF01527)
521096.Tpau_1525(PF09995)
521096.Tpau_0303(PF01527)
521096.Tpau_0302(PF00665)
521096.Tpau_0301(PF01527)
521096.Tpau_0300(PF00665)
521096.Tpau_4144(PF03405)
521096.Tpau_1667(PF01527)
521096.Tpau_1666(PF00665)
521096.Tpau_3014(PF07929)
521096.Tpau_2300(PF09348)
521096.Tpau_2606(PF00665)
521096.Tpau_1430(PF01527)
521096.Tpau_1438(PF00665)
521096.Tpau_1439(PF01527)
521096.Tpau_1647(PF01527)
521096.Tpau_1648(PF00665)
521096.Tpau_1429(PF00665)
521096.Tpau_3486(PF01527)
521096.Tpau_0594(PF09995)
521096.Tpau_0378(PF00665)
521096.Tpau_1284(PF09995)
521096.Tpau_0377(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================