Effective results for Chloroherpeton thalassium ATCC 35110 (eggnog40)

Summary

Number of putative secreted proteins: 54
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 54 proteins (7 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
517418.Ctha_2147				(PF16889)	ER
517418.Ctha_0628				(PF03209)	ER; (ER)
517418.Ctha_2402				(PF03209)	ER
517418.Ctha_1213				(PF16889)	(mitochondrial)
517418.Ctha_0111				(PF13394)	(mitochondrial)
517418.Ctha_0340				PF10300	mitochondrial
517418.Ctha_0002				(PF03647)	ER
517418.Ctha_2441				(PF02514)	mitochondrial; (mitochondrial)
517418.Ctha_1674				PF00688	ER
517418.Ctha_2273				PF04831	ER
517418.Ctha_2022				(PF16889)	mitochondrial
517418.Ctha_1905				PF05176	ER
517418.Ctha_1698				(PF11965) (PF02514)
517418.Ctha_0606				(PF12159) (PF10693)
517418.Ctha_2442				(PF01078)	(ER)
517418.Ctha_1285				(PF11965) (PF02514)
517418.Ctha_1287				(PF11965) (PF02514)
517418.Ctha_1032				(PF00148)
517418.Ctha_1031				(PF00148)
517418.Ctha_1030				(PF00148)
517418.Ctha_2360				(PF00025)
517418.Ctha_2553				(PF16114)
517418.Ctha_0303				(PF01078)
517418.Ctha_2413				(PF13394)
517418.Ctha_1372				(PF00148)
517418.Ctha_1373				(PF00148)
517418.Ctha_0817				(PF00148)
517418.Ctha_0103				(PF13394)
517418.Ctha_1188				(PF02943)
517418.Ctha_0691				(PF16095)
517418.Ctha_0900				(PF13281)
517418.Ctha_0124				(PF13394)
517418.Ctha_2074				(PF01078)
517418.Ctha_2073				(PF01078)
517418.Ctha_2672				(PF03901)
517418.Ctha_1246				(PF13394)
517418.Ctha_1717				(PF04423)
517418.Ctha_2445				(PF02514)
517418.Ctha_2443				(PF01078)
517418.Ctha_2069				(PF04765)
517418.Ctha_1892				PF07082
517418.Ctha_1255				PF07082
517418.Ctha_2654				(PF03209)
517418.Ctha_1550				(PF13394)
517418.Ctha_2394				(PF13394)
517418.Ctha_1294				(PF08662)
517418.Ctha_1346				PF15711
517418.Ctha_0400				(PF00025)
517418.Ctha_0695				(PF00847)
517418.Ctha_1833				(PF00148)
517418.Ctha_1831				(PF00148)
517418.Ctha_0198				(PF00148)
517418.Ctha_1028				(PF13394)
517418.Ctha_1029				(PF00148)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================