Effective results for Thermosipho africanus TCF52B (eggnog40)

Summary

Number of putative secreted proteins: 71
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 71 proteins (26 high, 45 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
484019.THA_2022				(PF01527) PF13276 (PF00665)
484019.THA_1295				(PF03644)	ER
484019.THA_2031				(PF01527) PF13276 (PF00665)
484019.THA_1392				(PF06245)	(mitochondrial)
484019.THA_817				(PF06245)	mitochondrial; (mitochondrial)
484019.THA_1832				(PF01094)	ER
484019.THA_1956				(PF01930)	(mitochondrial)
484019.THA_2033				(PF01527) PF13276 (PF00665)
484019.THA_2040				(PF01527) PF13276 (PF00665)
484019.THA_2007				(PF01527) PF13276 (PF00665)
484019.THA_2016				(PF01527) PF13276 (PF00665)
484019.THA_2012				(PF01527) PF13276 (PF00665)
484019.THA_2018				(PF01527) PF13276 (PF00665)
484019.THA_503				PF13276 (PF00665)
484019.THA_1983				PF13276 (PF00665)
484019.THA_1086				(PF01902)	(ER)
484019.THA_1436				PF13276 (PF00665)
484019.THA_112				PF13276 (PF00665)
484019.THA_14				PF13276 (PF00665)
484019.THA_1560				(PF07837) (PF02971)
484019.THA_768				PF13276 (PF00665)
484019.THA_375				PF13276 (PF00665)
484019.THA_495				PF13276 (PF00665)
484019.THA_499				PF13276 (PF00665)
484019.THA_818				PF13276 (PF00665)
484019.THA_1010				PF13276 (PF00665)
484019.THA_553				PF13276 (PF00665)
484019.THA_1107				PF13276 (PF00665)
484019.THA_1858				(PF01902)	(mitochondrial)
484019.THA_985				PF13276 (PF00665)
484019.THA_988				PF13276 (PF00665)
484019.THA_1278				PF13276 (PF00665)
484019.THA_882				PF13276 (PF00665)
484019.THA_1267				PF13276 (PF00665)
484019.THA_1070				(PF03602)
484019.THA_1254				(PF01930)
484019.THA_2043				(PF01527)
484019.THA_782				(PF01257)
484019.THA_785				(PF01257)
484019.THA_787				(PF01257)
484019.THA_786				(PF01257)
484019.THA_2029				(PF01527)
484019.THA_2028				(PF01527)
484019.THA_2023				(PF01527)
484019.THA_1744				(PF11977)
484019.THA_596				(PF01637)
484019.THA_933				(PF01535)
484019.THA_161				(PF12646)
484019.THA_717				(PF01930)
484019.THA_1559				(PF01257)
484019.THA_1556				(PF01257)
484019.THA_1555				(PF01257)
484019.THA_1398				(PF03602)
484019.THA_709				(PF14249)
484019.THA_601				(PF01637)
484019.THA_605				(PF01637)
484019.THA_2025				(PF01527)
484019.THA_2021				(PF01527)
484019.THA_2034				(PF01527)
484019.THA_2035				(PF01527)
484019.THA_2036				(PF01527)
484019.THA_2030				(PF01527)
484019.THA_2032				(PF01527)
484019.THA_2009				(PF01527)
484019.THA_2008				(PF01527)
484019.THA_2003				(PF01527)
484019.THA_2002				(PF01527)
484019.THA_185				(PF03602)
484019.THA_2013				(PF01527)
484019.THA_2010				(PF01527)
484019.THA_2011				(PF01527)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================