Metamenu

Effective results for Geobacillus sp. WCH70 (eggnog40)

Summary

Number of putative secreted proteins: 154
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 154 proteins (62 high, 92 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
471223.GWCH70_3143PF07282(mitochondrial)
471223.GWCH70_0225(PF01609)ER; (ER)
471223.GWCH70_0432(PF01609)ER; (ER)
471223.GWCH70_2569(PF13551)(mitochondrial)
471223.GWCH70_2682PF07282mitochondrial
471223.GWCH70_0234PF07282mitochondrial
471223.GWCH70_2358PF07282mitochondrial
471223.GWCH70_2228PF07282mitochondrial
471223.GWCH70_0331(PF01609)ER; (ER)
471223.GWCH70_2180(PF01609)ER; (ER)
471223.GWCH70_1854PF07282mitochondrial
471223.GWCH70_2240PF07282mitochondrial
471223.GWCH70_0079(PF01609)ER; (ER)
471223.GWCH70_0456PF07282mitochondrial
471223.GWCH70_1446PF07282mitochondrial
471223.GWCH70_1851PF07282mitochondrial
471223.GWCH70_0585PF07282mitochondrial
471223.GWCH70_2261PF07282mitochondrial
471223.GWCH70_1604PF07282mitochondrial
471223.GWCH70_3129(PF13551)(mitochondrial)
471223.GWCH70_2095PF07282mitochondrial
471223.GWCH70_2654PF07282mitochondrial
471223.GWCH70_2274PF07282mitochondrial
471223.GWCH70_0817(PF01609)ER; (ER)
471223.GWCH70_0813PF00609(mitochondrial)
471223.GWCH70_3136PF07282mitochondrial
471223.GWCH70_1921PF07282mitochondrial
471223.GWCH70_0252(PF01609)ER; (ER)
471223.GWCH70_1498(PF01609)ER; (ER)
471223.GWCH70_1257PF07282mitochondrial
471223.GWCH70_2867PF07282mitochondrial
471223.GWCH70_0530PF07282mitochondrial
471223.GWCH70_2707(PF01609)ER; (ER)
471223.GWCH70_0284PF07282mitochondrial
471223.GWCH70_1655(PF13551)(mitochondrial)
471223.GWCH70_0632PF07282mitochondrial
471223.GWCH70_0197(PF13551)(mitochondrial)
471223.GWCH70_0171PF07282mitochondrial
471223.GWCH70_0615PF07282mitochondrial
471223.GWCH70_1586PF07282mitochondrial
471223.GWCH70_3212PF07282(mitochondrial)
471223.GWCH70_0162PF07282mitochondrial
471223.GWCH70_1753PF07282mitochondrial
471223.GWCH70_2824(PF01609)ER; (ER)
471223.GWCH70_0408(PF01609)ER; (ER)
471223.GWCH70_2302(PF09683)mitochondrial; (mitochondrial)
471223.GWCH70_1768PF07282mitochondrial
471223.GWCH70_1167PF07282mitochondrial
471223.GWCH70_1418(PF01609)mitochondrial
471223.GWCH70_1577PF07282mitochondrial
471223.GWCH70_3227PF07282
471223.GWCH70_1792(PF01610)
471223.GWCH70_0220(PF03050)
471223.GWCH70_0221PF07282
471223.GWCH70_1403PF07282
471223.GWCH70_1542(PF02371)
471223.GWCH70_0541(PF00872)
471223.GWCH70_3150(PF13151)
471223.GWCH70_2178PF07282
471223.GWCH70_2681(PF01609)
471223.GWCH70_1326(PF02371)
471223.GWCH70_1327PF07282
471223.GWCH70_1328(PF02810)
471223.GWCH70_1333PF07282
471223.GWCH70_1434(PF01610)
471223.GWCH70_1432(PF03050)
471223.GWCH70_1551(PF02371)
471223.GWCH70_0332(PF00872)
471223.GWCH70_0336PF07282
471223.GWCH70_1429(PF02810)
471223.GWCH70_3008(PF02810)
471223.GWCH70_3000PF07282
471223.GWCH70_0859PF07282
471223.GWCH70_2504(PF13921)
471223.GWCH70_3178(PF08950)
471223.GWCH70_2752PF07282
471223.GWCH70_0328PF07282
471223.GWCH70_1457(PF03050)
471223.GWCH70_2846PF07282
471223.GWCH70_2538PF07282
471223.GWCH70_0865(PF02371)
471223.GWCH70_3106(PF13541)
471223.GWCH70_2083(PF02371)
471223.GWCH70_0472PF07282
471223.GWCH70_1870PF07282
471223.GWCH70_0876(PF03050)
471223.GWCH70_0879(PF01609)
471223.GWCH70_2089(PF02371)
471223.GWCH70_1295(PF03050)
471223.GWCH70_0273PF07282
471223.GWCH70_1517(PF01609)
471223.GWCH70_1513(PF13551)
471223.GWCH70_2886(PF00872)
471223.GWCH70_1864(PF02371)
471223.GWCH70_0803(PF01610)
471223.GWCH70_3125(PF01610)
471223.GWCH70_3127(PF02371)
471223.GWCH70_2090(PF02371)
471223.GWCH70_1281PF07282
471223.GWCH70_2389(PF02371)
471223.GWCH70_1673(PF01609)
471223.GWCH70_3384PF07282
471223.GWCH70_1819PF07282
471223.GWCH70_0810(PF02873)
471223.GWCH70_0812(PF00872)
471223.GWCH70_3130(PF02371)
471223.GWCH70_2047(PF02371)
471223.GWCH70_1665(PF00872)
471223.GWCH70_0728(PF02371)
471223.GWCH70_0727PF07282
471223.GWCH70_1808PF07282
471223.GWCH70_1806(PF03050)
471223.GWCH70_3249(PF13541)
471223.GWCH70_2917(PF00872)
471223.GWCH70_3098(PF01610)
471223.GWCH70_1240PF07282
471223.GWCH70_1658(PF00872)
471223.GWCH70_1730(PF01610)
471223.GWCH70_2842(PF00872)
471223.GWCH70_3079(PF13541)
471223.GWCH70_1008(PF13921)
471223.GWCH70_3186(PF03050)
471223.GWCH70_0352(PF02371)
471223.GWCH70_0190PF07282
471223.GWCH70_0193(PF03050)
471223.GWCH70_2039PF07282
471223.GWCH70_0911(PF02371)
471223.GWCH70_1695(PF00872)
471223.GWCH70_1699(PF02371)
471223.GWCH70_3218(PF08950)
471223.GWCH70_3214(PF02810)
471223.GWCH70_3210(PF02810)
471223.GWCH70_3211(PF02810)
471223.GWCH70_2928PF07282
471223.GWCH70_1962PF07282
471223.GWCH70_3327PF07282
471223.GWCH70_3060PF07282
471223.GWCH70_1367(PF01610)
471223.GWCH70_1369(PF02371)
471223.GWCH70_0762(PF00872)
471223.GWCH70_0161(PF00872)
471223.GWCH70_0167(PF01610)
471223.GWCH70_1755(PF01610)
471223.GWCH70_2822(PF00872)
471223.GWCH70_0577(PF01609)
471223.GWCH70_3208(PF02810)
471223.GWCH70_2952(PF03050)
471223.GWCH70_1023(PF02371)
471223.GWCH70_1021(PF02873)
471223.GWCH70_0084(PF13541)
471223.GWCH70_1766(PF00872)
471223.GWCH70_0366(PF00872)
471223.GWCH70_2801(PF00872)
471223.GWCH70_2806PF07282

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================