Effective results for Rickettsia endosymbiont of Ixodes scapularis (eggnog40)
Summary
Number of putative secreted proteins: 269
- Predicted by T4SEpre: 104
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 204 proteins (177 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 444612.REIS_1704 | + | (PF02074) | mitochondrial | ||
| 444612.REIS_0373 | + | ER | |||
| 444612.REIS_1702 | (PF02074) | mitochondrial | |||
| 444612.REIS_0725 | + | ER | |||
| 444612.REIS_1737 | (PF01695) | (mitochondrial) | |||
| 444612.REIS_0738 | + | ER | |||
| 444612.REIS_1985 | PF02326 | (ER); ER | |||
| 444612.REIS_0135 | (PF01695) | (mitochondrial) | |||
| 444612.REIS_0224 | (PF01695) | (mitochondrial) | |||
| 444612.REIS_0042 | PF13358 | mitochondrial | |||
| 444612.REIS_0041 | + | PF00872 | (plastid) | ||
| 444612.REIS_2031 | + | ER | |||
| 444612.REIS_0101 | + | ER | |||
| 444612.REIS_1671 | (PF01695) | (mitochondrial) | |||
| 444612.REIS_1277 | + | ER | |||
| 444612.REIS_1075 | + | ER | |||
| 444612.REIS_0683 | PF01609 | mitochondrial | |||
| 444612.REIS_2018 | + | ER | |||
| 444612.REIS_0878 | PF01609 | mitochondrial | |||
| 444612.REIS_1911 | + | ER | |||
| 444612.REIS_1282 | PF01609 | mitochondrial | |||
| 444612.REIS_0251 | PF01609 | mitochondrial | |||
| 444612.REIS_1231 | PF01609 | mitochondrial | |||
| 444612.REIS_1239 | + | ER | |||
| 444612.REIS_0404 | + | ER | |||
| 444612.REIS_0531 | PF03219 | mitochondrial; (mitochondrial) | |||
| 444612.REIS_0501 | PF01609 | (mitochondrial) | |||
| 444612.REIS_0291 | PF01609 | mitochondrial | |||
| 444612.REIS_0614 | (PF01695) | (mitochondrial) | |||
| 444612.REIS_0510 | + | (mitochondrial); mitochondrial | |||
| 444612.REIS_0355 | (PF01695) | (mitochondrial) | |||
| 444612.REIS_1396 | PF01609 | mitochondrial | |||
| 444612.REIS_1536 | (PF01695) | (mitochondrial) | |||
| 444612.REIS_0384 | + | ER | |||
| 444612.REIS_0704 | PF01609 | ER | |||
| 444612.REIS_0959 | (PF13592) PF13358 | ||||
| 444612.REIS_1537 | + | PF00872 | |||
| 444612.REIS_1703 | (PF13592) PF13358 | ||||
| 444612.REIS_1458 | + | PF00872 | |||
| 444612.REIS_1731 | (PF13592) PF13358 | ||||
| 444612.REIS_1602 | + | PF00872 | |||
| 444612.REIS_0930 | + | PF00872 | |||
| 444612.REIS_1187 | + | (ER) | |||
| 444612.REIS_1068 | (PF13592) PF13358 | ||||
| 444612.REIS_0336 | + | PF00872 | |||
| 444612.REIS_1055 | + | (PF13328) | |||
| 444612.REIS_0473 | + | PF00872 | |||
| 444612.REIS_1924 | + | PF00872 | |||
| 444612.REIS_0726 | + | PF00872 | |||
| 444612.REIS_1142 | + | PF00872 | |||
| 444612.REIS_1133 | + | PF00872 | not used | ||
| 444612.REIS_1355 | + | PF00872 | |||
| 444612.REIS_2100 | + | (PF13328) | |||
| 444612.REIS_0415 | + | (PF02902) | |||
| 444612.REIS_0757 | (PF13592) PF13358 | ||||
| 444612.REIS_2054 | + | PF00872 | |||
| 444612.REIS_1740 | + | PF00872 | |||
| 444612.REIS_1107 | (PF13592) PF13358 | ||||
| 444612.REIS_0512 | PF13358 | (ER) | |||
| 444612.REIS_0517 | + | PF00872 | |||
| 444612.REIS_0353 | + | PF00872 | |||
| 444612.REIS_0778 | (PF13592) PF13358 | ||||
| 444612.REIS_0974 | + | PF00872 | |||
| 444612.REIS_1558 | + | PF00872 | |||
| 444612.REIS_1394 | (PF13592) PF13358 | ||||
| 444612.REIS_1822 | + | (mitochondrial) | |||
| 444612.REIS_0165 | (PF13592) PF13358 | ||||
| 444612.REIS_1498 | PF03219 | (ER) | |||
| 444612.REIS_1942 | + | PF00872 | |||
| 444612.REIS_0354 | (PF01695) | (plastid) | |||
| 444612.REIS_0577 | PF01609 | ||||
| 444612.REIS_0575 | + | ||||
| 444612.REIS_0573 | + | ||||
| 444612.REIS_1712 | PF13358 | ||||
| 444612.REIS_0171 | PF13358 | ||||
| 444612.REIS_0170 | + | ||||
| 444612.REIS_0378 | PF01609 | ||||
| 444612.REIS_1120 | PF01609 | ||||
| 444612.REIS_0391 | PF01609 | ||||
| 444612.REIS_0396 | PF03219 | ||||
| 444612.REIS_1621 | + | ||||
| 444612.REIS_1155 | + | ||||
| 444612.REIS_0950 | + | ||||
| 444612.REIS_0352 | PF00872 | ||||
| 444612.REIS_1538 | PF00872 | ||||
| 444612.REIS_0006 | (PF01695) | ||||
| 444612.REIS_1530 | (PF02074) | ||||
| 444612.REIS_1020 | PF01609 | ||||
| 444612.REIS_1447 | PF13358 | ||||
| 444612.REIS_0540 | (PF13328) | ||||
| 444612.REIS_1153 | + | not used | |||
| 444612.REIS_0812 | + | ||||
| 444612.REIS_1147 | PF00872 | ||||
| 444612.REIS_1146 | PF00872 | ||||
| 444612.REIS_0035 | PF01609 | ||||
| 444612.REIS_0038 | PF00872 | ||||
| 444612.REIS_0039 | PF00872 | ||||
| 444612.REIS_1030 | PF13358 | ||||
| 444612.REIS_1037 | + | ||||
| 444612.REIS_1451 | PF13358 | ||||
| 444612.REIS_1457 | PF00872 | ||||
| 444612.REIS_1455 | PF13358 | ||||
| 444612.REIS_1459 | (PF01715) | ||||
| 444612.REIS_2080 | PF01609 | ||||
| 444612.REIS_2083 | PF01609 | ||||
| 444612.REIS_2082 | PF01609 | ||||
| 444612.REIS_2089 | + | ||||
| 444612.REIS_0487 | + | ||||
| 444612.REIS_0150 | + | ||||
| 444612.REIS_0804 | PF03219 | ||||
| 444612.REIS_1605 | + | ||||
| 444612.REIS_1601 | PF00872 | ||||
| 444612.REIS_0934 | PF00872 | ||||
| 444612.REIS_0933 | PF00872 | ||||
| 444612.REIS_0932 | PF00872 | ||||
| 444612.REIS_1193 | + | ||||
| 444612.REIS_1190 | PF03219 | not used | |||
| 444612.REIS_1198 | PF13358 | ||||
| 444612.REIS_1199 | PF00872 | ||||
| 444612.REIS_1280 | PF01609 | ||||
| 444612.REIS_0024 | PF00872 | ||||
| 444612.REIS_1462 | + | ||||
| 444612.REIS_1460 | (PF01715) | ||||
| 444612.REIS_1863 | PF01609 | ||||
| 444612.REIS_0104 | + | ||||
| 444612.REIS_1615 | PF01609 | not used | |||
| 444612.REIS_1616 | PF01609 | ||||
| 444612.REIS_1474 | PF01609 | ||||
| 444612.REIS_1870 | PF13358 | ||||
| 444612.REIS_1872 | + | ||||
| 444612.REIS_1980 | PF01609 | ||||
| 444612.REIS_1983 | PF00872 | ||||
| 444612.REIS_1982 | PF00872 | ||||
| 444612.REIS_0773 | PF00872 | ||||
| 444612.REIS_0775 | PF00872 | ||||
| 444612.REIS_0759 | PF13358 | ||||
| 444612.REIS_0595 | + | ||||
| 444612.REIS_0914 | + | ||||
| 444612.REIS_0820 | PF00872 | ||||
| 444612.REIS_0822 | PF00872 | ||||
| 444612.REIS_1263 | (PF01695) | not used | |||
| 444612.REIS_0040 | PF00872 | not used | |||
| 444612.REIS_1060 | PF01609 | ||||
| 444612.REIS_1066 | PF01609 | ||||
| 444612.REIS_1081 | PF00872 | ||||
| 444612.REIS_1409 | + | ||||
| 444612.REIS_1402 | + | ||||
| 444612.REIS_1557 | (PF13328) | ||||
| 444612.REIS_1318 | + | ||||
| 444612.REIS_2033 | PF01609 | ||||
| 444612.REIS_1679 | PF00872 | ||||
| 444612.REIS_0216 | PF13358 | ||||
| 444612.REIS_1095 | PF01609 | ||||
| 444612.REIS_1099 | PF00872 | ||||
| 444612.REIS_1412 | PF00872 | ||||
| 444612.REIS_1411 | PF00872 | not used | |||
| 444612.REIS_1410 | PF00872 | ||||
| 444612.REIS_1301 | PF01609 | ||||
| 444612.REIS_1309 | PF13358 | ||||
| 444612.REIS_1754 | + | ||||
| 444612.REIS_0684 | PF01609 | ||||
| 444612.REIS_0447 | PF01609 | ||||
| 444612.REIS_0663 | + | ||||
| 444612.REIS_1799 | (PF13328) | ||||
| 444612.REIS_0665 | PF03219 | ||||
| 444612.REIS_1244 | PF13358 | ||||
| 444612.REIS_1333 | PF01609 | ||||
| 444612.REIS_1331 | + | ||||
| 444612.REIS_0476 | + | ||||
| 444612.REIS_0474 | PF00872 | ||||
| 444612.REIS_1650 | + | ||||
| 444612.REIS_0277 | PF01609 | ||||
| 444612.REIS_0655 | PF01609 | ||||
| 444612.REIS_0303 | PF01609 | ||||
| 444612.REIS_0877 | PF01609 | ||||
| 444612.REIS_1259 | + | ||||
| 444612.REIS_1321 | + | ||||
| 444612.REIS_1926 | PF13358 | ||||
| 444612.REIS_1929 | + | ||||
| 444612.REIS_0641 | PF13358 | ||||
| 444612.REIS_0867 | (PF13328) | ||||
| 444612.REIS_0727 | PF00872 | ||||
| 444612.REIS_1631 | PF01609 | ||||
| 444612.REIS_1141 | PF00872 | ||||
| 444612.REIS_0463 | PF00872 | ||||
| 444612.REIS_0464 | PF01609 | ||||
| 444612.REIS_0467 | PF13358 | ||||
| 444612.REIS_0260 | + | ||||
| 444612.REIS_0318 | PF01609 | ||||
| 444612.REIS_0864 | + | ||||
| 444612.REIS_0888 | + | ||||
| 444612.REIS_1686 | PF00872 | not used | |||
| 444612.REIS_1685 | PF00872 | ||||
| 444612.REIS_1680 | PF00872 | ||||
| 444612.REIS_1358 | PF00872 | ||||
| 444612.REIS_1357 | PF00872 | ||||
| 444612.REIS_1916 | PF01609 | ||||
| 444612.REIS_0111 | + | ||||
| 444612.REIS_0445 | PF01609 | ||||
| 444612.REIS_0634 | PF00872 | ||||
| 444612.REIS_0635 | PF00872 | ||||
| 444612.REIS_1233 | PF01609 | ||||
| 444612.REIS_1232 | (PF09825) | ||||
| 444612.REIS_1128 | + | ||||
| 444612.REIS_0747 | + | ||||
| 444612.REIS_1126 | + | ||||
| 444612.REIS_1124 | PF13358 | ||||
| 444612.REIS_1349 | + | ||||
| 444612.REIS_1346 | + | ||||
| 444612.REIS_0669 | + | ||||
| 444612.REIS_0534 | PF13358 | ||||
| 444612.REIS_1593 | + | ||||
| 444612.REIS_1759 | PF13358 | ||||
| 444612.REIS_0335 | PF00872 | ||||
| 444612.REIS_0334 | PF13358 | ||||
| 444612.REIS_1200 | PF00872 | ||||
| 444612.REIS_1113 | PF01609 | ||||
| 444612.REIS_1111 | PF01609 | ||||
| 444612.REIS_1549 | + | ||||
| 444612.REIS_1374 | PF01609 | ||||
| 444612.REIS_1972 | + | ||||
| 444612.REIS_2053 | PF00872 | not used | |||
| 444612.REIS_1580 | + | ||||
| 444612.REIS_0294 | PF01609 | ||||
| 444612.REIS_0616 | PF01609 | ||||
| 444612.REIS_0617 | (PF01695) | ||||
| 444612.REIS_0343 | PF01609 | ||||
| 444612.REIS_0762 | PF01609 | ||||
| 444612.REIS_0983 | + | ||||
| 444612.REIS_0987 | PF13358 | ||||
| 444612.REIS_1963 | PF01609 | ||||
| 444612.REIS_0618 | PF13358 | ||||
| 444612.REIS_2044 | PF13358 | ||||
| 444612.REIS_2046 | PF13358 | ||||
| 444612.REIS_0513 | (PF01695) | ||||
| 444612.REIS_0516 | PF01609 | ||||
| 444612.REIS_0518 | PF00872 | ||||
| 444612.REIS_0285 | PF03219 | ||||
| 444612.REIS_0194 | PF01609 | ||||
| 444612.REIS_0191 | PF00872 | ||||
| 444612.REIS_0192 | PF00872 | ||||
| 444612.REIS_0600 | PF01609 | not used | |||
| 444612.REIS_1482 | (PF13328) | ||||
| 444612.REIS_0995 | (PF14328) | ||||
| 444612.REIS_1175 | PF13358 | not used | |||
| 444612.REIS_1176 | PF00872 | ||||
| 444612.REIS_1178 | PF00872 | ||||
| 444612.REIS_1179 | PF01609 | ||||
| 444612.REIS_0977 | PF01609 | ||||
| 444612.REIS_0975 | PF00872 | ||||
| 444612.REIS_1398 | PF00872 | ||||
| 444612.REIS_1399 | PF00872 | ||||
| 444612.REIS_1397 | PF01609 | ||||
| 444612.REIS_1958 | PF13358 | ||||
| 444612.REIS_1765 | PF01609 | ||||
| 444612.REIS_1780 | + | ||||
| 444612.REIS_0168 | PF00872 | ||||
| 444612.REIS_0169 | PF00872 | ||||
| 444612.REIS_0164 | PF13358 | not used | |||
| 444612.REIS_0166 | PF00872 | ||||
| 444612.REIS_0167 | PF00872 | ||||
| 444612.REIS_0360 | PF01609 | ||||
| 444612.REIS_0389 | PF13358 | ||||
| 444612.REIS_1161 | + | ||||
| 444612.REIS_1169 | + | ||||
| 444612.REIS_0949 | + | ||||
| 444612.REIS_1543 | PF01609 | ||||
| 444612.REIS_1386 | + | ||||
| 444612.REIS_1943 | PF00872 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 2.2 (22/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 2.2 (22/10 KEGG proteins)
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