Metamenu

Effective results for Clostridium spiroforme DSM 1552 (eggnog40)

Summary

Number of putative secreted proteins: 183
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 30 eukaryotic-like domains, contained in 183 proteins (63 high, 120 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
428126.CLOSPI_02120PF07555 (PF00754) (PF02838)(ER); (mitochondrial)
428126.CLOSPI_00500PF07555 (PF00754) (PF02838)ER
428126.CLOSPI_02064PF07555 (PF00754) (PF02838)ER
428126.CLOSPI_01048PF07555 (PF00754) (PF02838)ER
428126.CLOSPI_00564PF07555 (PF00754) (PF02838)ER
428126.CLOSPI_01979(PF00754) (PF02838) PF04253(mitochondrial)
428126.CLOSPI_02118PF07555 (PF00754) (PF02838)ER; (ER)
428126.CLOSPI_00642PF13276 (PF00665)mitochondrial
428126.CLOSPI_01460PF13276 (PF00665)mitochondrial
428126.CLOSPI_01465PF13276 (PF00665)mitochondrial
428126.CLOSPI_00226PF13276 (PF00665)mitochondrial
428126.CLOSPI_00711PF13276 (PF00665)mitochondrial
428126.CLOSPI_02314PF13276 (PF00665)mitochondrial
428126.CLOSPI_02050PF13276 (PF00665)mitochondrial
428126.CLOSPI_02218(PF12972) (PF00754) (PF12971) (PF05089)
428126.CLOSPI_02219(PF00754) (PF02838)(ER)
428126.CLOSPI_02228(PF12972) (PF00754) (PF12971) (PF05089)
428126.CLOSPI_01615PF13276 (PF00665)mitochondrial
428126.CLOSPI_01769PF13276 (PF00665)mitochondrial
428126.CLOSPI_00700PF13276 (PF00665)mitochondrial
428126.CLOSPI_00638(PF00754) (PF02838)mitochondrial; (mitochondrial)
428126.CLOSPI_00383PF13276 (PF00665)mitochondrial
428126.CLOSPI_00724PF13276 (PF00665)mitochondrial
428126.CLOSPI_00846(PF00665)(mitochondrial)
428126.CLOSPI_02107(PF16403)ER; (mitochondrial)
428126.CLOSPI_01926(PF02719)ER
428126.CLOSPI_00293(PF00754)ER
428126.CLOSPI_00679(PF00754)ER
428126.CLOSPI_00079(PF08124) (PF00754) (PF02884)
428126.CLOSPI_01023PF13276mitochondrial
428126.CLOSPI_02126(PF00754)ER
428126.CLOSPI_01468(PF13320)ER
428126.CLOSPI_01676PF07555 (PF00754) (PF02838)
428126.CLOSPI_00156(PF16403)ER
428126.CLOSPI_01308(PF08282)(ER)
428126.CLOSPI_00329(PF00754)mitochondrial; ER
428126.CLOSPI_01649(PF02838)ER
428126.CLOSPI_01424(PF03266)(mitochondrial)
428126.CLOSPI_00338(PF00754)ER
428126.CLOSPI_00804(PF03054)(mitochondrial)
428126.CLOSPI_01763(PF12724)mitochondrial
428126.CLOSPI_02419(PF01610)mitochondrial; (mitochondrial)
428126.CLOSPI_00499(PF13320)ER
428126.CLOSPI_01443(PF01610)mitochondrial
428126.CLOSPI_01018(PF02357)(mitochondrial)
428126.CLOSPI_01017(PF02357)(mitochondrial)
428126.CLOSPI_02119(PF02838)(ER)
428126.CLOSPI_00848PF13276 (PF00665)
428126.CLOSPI_01112PF13276 (PF00665)
428126.CLOSPI_00643PF13276 (PF00665)
428126.CLOSPI_00647(PF03883)(mitochondrial)
428126.CLOSPI_02128(PF08124) (PF02884)
428126.CLOSPI_01679(PF08282)(ER)
428126.CLOSPI_02311PF13276 (PF00665)
428126.CLOSPI_02046PF13276 (PF00665)
428126.CLOSPI_01500(PF16403)(ER)
428126.CLOSPI_02209PF13276 (PF00665)
428126.CLOSPI_01533PF13276 (PF00665)
428126.CLOSPI_01741PF13276 (PF00665)
428126.CLOSPI_01564(PF03054)mitochondrial; not used
428126.CLOSPI_00340(PF00754)(mitochondrial)
428126.CLOSPI_00767PF13276 (PF00665)
428126.CLOSPI_02091PF13276 (PF00665)
428126.CLOSPI_01114(PF01610)(mitochondrial)
428126.CLOSPI_01774PF13276 (PF00665)
428126.CLOSPI_01556PF13276 (PF00665)
428126.CLOSPI_00280PF00078
428126.CLOSPI_01226PF00078
428126.CLOSPI_00066PF13276
428126.CLOSPI_00261(PF13597)
428126.CLOSPI_00264PF00078
428126.CLOSPI_01925PF00078
428126.CLOSPI_01922(PF02357)
428126.CLOSPI_02074PF00078
428126.CLOSPI_01452(PF01610)
428126.CLOSPI_00988(PF00872)
428126.CLOSPI_00989(PF00872)
428126.CLOSPI_01675(PF02357)
428126.CLOSPI_01215PF00078
428126.CLOSPI_00273(PF01991)
428126.CLOSPI_02001(PF00872)
428126.CLOSPI_01022(PF01527)
428126.CLOSPI_01021(PF08282)
428126.CLOSPI_01024(PF00665)
428126.CLOSPI_01025(PF08282)
428126.CLOSPI_00641(PF01527)
428126.CLOSPI_02478PF00078
428126.CLOSPI_00644(PF01527)
428126.CLOSPI_00249(PF16403)
428126.CLOSPI_02349PF00078
428126.CLOSPI_02121PF00078
428126.CLOSPI_01698PF04253
428126.CLOSPI_01878(PF00872)
428126.CLOSPI_00874(PF00665)
428126.CLOSPI_00875(PF00665)
428126.CLOSPI_01877(PF00872)
428126.CLOSPI_00098(PF00665)
428126.CLOSPI_00097PF00078
428126.CLOSPI_01280(PF12724)
428126.CLOSPI_01461(PF01527)
428126.CLOSPI_01464(PF01527)
428126.CLOSPI_00401(PF08282)
428126.CLOSPI_00376(PF00872)
428126.CLOSPI_00792(PF12724)
428126.CLOSPI_00790(PF02357)
428126.CLOSPI_01879PF00078
428126.CLOSPI_00228PF00078
428126.CLOSPI_00227(PF01527)
428126.CLOSPI_00225PF00078
428126.CLOSPI_00719(PF00872)
428126.CLOSPI_02259(PF13597)
428126.CLOSPI_01898PF00078
428126.CLOSPI_00789(PF02357)
428126.CLOSPI_01300(PF00665)
428126.CLOSPI_02313(PF01527)
428126.CLOSPI_02312(PF01527)
428126.CLOSPI_01666(PF08282)
428126.CLOSPI_02049(PF01527)
428126.CLOSPI_00593PF00078
428126.CLOSPI_00421(PF08282)
428126.CLOSPI_01888(PF08282)
428126.CLOSPI_00683(PF01610)
428126.CLOSPI_00682(PF01610)not used
428126.CLOSPI_01085(PF12646)
428126.CLOSPI_02309(PF00754)
428126.CLOSPI_01655(PF08282)
428126.CLOSPI_01656(PF08282)
428126.CLOSPI_00698PF00078
428126.CLOSPI_00699(PF01527)
428126.CLOSPI_02194(PF12437)
428126.CLOSPI_01427(PF00872)
428126.CLOSPI_01534(PF01527)
428126.CLOSPI_01983PF00078
428126.CLOSPI_01633(PF08282)
428126.CLOSPI_01742(PF01527)
428126.CLOSPI_00345(PF12437)
428126.CLOSPI_00905PF00078
428126.CLOSPI_00768(PF02719)
428126.CLOSPI_00766(PF01527)
428126.CLOSPI_02047(PF01527)
428126.CLOSPI_02533(PF00872)
428126.CLOSPI_01623PF14853
428126.CLOSPI_02084(PF03054)
428126.CLOSPI_02406(PF08282)
428126.CLOSPI_00364(PF08282)
428126.CLOSPI_00375(PF00872)not used
428126.CLOSPI_00374(PF00872)
428126.CLOSPI_00377PF00078
428126.CLOSPI_01370PF00078
428126.CLOSPI_00712(PF01527)
428126.CLOSPI_00620(PF08282)
428126.CLOSPI_00158(PF08282)
428126.CLOSPI_01614PF00078
428126.CLOSPI_01617PF00078
428126.CLOSPI_01616(PF01527)
428126.CLOSPI_02092(PF01527)
428126.CLOSPI_01541(PF01610)
428126.CLOSPI_01811PF00078
428126.CLOSPI_01819(PF02719)
428126.CLOSPI_00817PF02037
428126.CLOSPI_00701PF00078
428126.CLOSPI_01141(PF00872)not used
428126.CLOSPI_01142(PF00872)
428126.CLOSPI_00382(PF01527)
428126.CLOSPI_01848(PF13597)
428126.CLOSPI_01770(PF01527)
428126.CLOSPI_01775(PF01527)
428126.CLOSPI_01444(PF01610)
428126.CLOSPI_01113(PF01527)
428126.CLOSPI_01554PF00078
428126.CLOSPI_01555(PF01527)
428126.CLOSPI_01806(PF12724)
428126.CLOSPI_01807(PF03883)
428126.CLOSPI_01808(PF03883)
428126.CLOSPI_00600(PF01610)
428126.CLOSPI_00640(PF01610)
428126.CLOSPI_01941(PF02719)
428126.CLOSPI_01703(PF00754)
428126.CLOSPI_01013(PF02719)
428126.CLOSPI_00725PF13276
428126.CLOSPI_00723(PF01527)
428126.CLOSPI_00721(PF08282)
428126.CLOSPI_00433(PF08282)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================