Effective results for Bartonella bacilliformis KC583 (eggnog40)

Summary

Number of putative secreted proteins: 70
- Predicted by T4SEpre: 37
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 36 proteins (19 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
360095.BARBAKC583_0597			+		ER
360095.BARBAKC583_0661				(PF00164)	(mitochondrial)
360095.BARBAKC583_0582			+		ER
360095.BARBAKC583_0703				(PF00237)	(mitochondrial)
360095.BARBAKC583_0671				(PF00237)	(mitochondrial)
360095.BARBAKC583_0603			+		ER; (ER)
360095.BARBAKC583_0607			+		mitochondrial
360095.BARBAKC583_0693				(PF00164)	(mitochondrial)
360095.BARBAKC583_0243			+		ER
360095.BARBAKC583_0063				(PF09731)	ER
360095.BARBAKC583_0378			+		(ER)
360095.BARBAKC583_0379			+		ER
360095.BARBAKC583_0724			+		ER
360095.BARBAKC583_0789				(PF06455)	ER
360095.BARBAKC583_0669				(PF03947) (PF00181)
360095.BARBAKC583_0701				(PF03947) (PF00181)
360095.BARBAKC583_0702				(PF00203)	(mitochondrial)
360095.BARBAKC583_0705				PF00252	(mitochondrial)
360095.BARBAKC583_0704				(PF07650) PF00189
360095.BARBAKC583_0707				PF00366	(mitochondrial)
360095.BARBAKC583_0670				(PF00203)	(mitochondrial)
360095.BARBAKC583_0673				PF00252	(mitochondrial)
360095.BARBAKC583_0672				(PF07650) PF00189
360095.BARBAKC583_0675				PF00366	(mitochondrial)
360095.BARBAKC583_0678				PF00673 PF00281
360095.BARBAKC583_0848			+		(mitochondrial)
360095.BARBAKC583_0408			+		(ER)
360095.BARBAKC583_0710				PF00673 PF00281
360095.BARBAKC583_1049			+
360095.BARBAKC583_0662				PF00177
360095.BARBAKC583_0666				PF00297
360095.BARBAKC583_0667				(PF00573)
360095.BARBAKC583_0665				PF00338
360095.BARBAKC583_0668				PF00276
360095.BARBAKC583_0584				PF00627
360095.BARBAKC583_1147			+
360095.BARBAKC583_1318			+
360095.BARBAKC583_0636			+
360095.BARBAKC583_0700				PF00276
360095.BARBAKC583_0706				(PF00831)
360095.BARBAKC583_0709				(PF17136)
360095.BARBAKC583_0708				PF00238
360095.BARBAKC583_0579			+
360095.BARBAKC583_0899			+
360095.BARBAKC583_0896			+
360095.BARBAKC583_1210			+
360095.BARBAKC583_0699				(PF00573)
360095.BARBAKC583_0698				PF00297
360095.BARBAKC583_0674				(PF00831)
360095.BARBAKC583_0677				(PF17136)
360095.BARBAKC583_0676				PF00238
360095.BARBAKC583_1289			+
360095.BARBAKC583_0394			+
360095.BARBAKC583_0606			+
360095.BARBAKC583_0697				PF00338
360095.BARBAKC583_0694				PF00177
360095.BARBAKC583_0123			+
360095.BARBAKC583_0930			+
360095.BARBAKC583_1043			+
360095.BARBAKC583_1248			+
360095.BARBAKC583_1125			+
360095.BARBAKC583_1117			+
360095.BARBAKC583_0721			+
360095.BARBAKC583_0539			+
360095.BARBAKC583_0113			+
360095.BARBAKC583_0593			+
360095.BARBAKC583_0474				(PF07650)
360095.BARBAKC583_0188			+
360095.BARBAKC583_0924			+
360095.BARBAKC583_0782			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================