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Genomes encoding eukaryotic-like proteins

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PF07650 KH domain

Copy number in non-pathogens:
Mean=1.96 Stddev=0.24

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Campylobacter coli s 4 3
Listeria monocytogenes s 4 3
Listeria monocytogenes s 4 3
Listeria monocytogenes s 4 3
Klebsiella pneumoniae s 4 3
Mycobacterium tuberculosis s 8 4
Citrobacter amalonaticus s 4 3
Klebsiella variicola s 8 4
Bifidobacterium longum s 4 3
Streptococcus agalactiae GB00865 s 4 3
Leptotrichia sp. oral taxon 215 str. W9775 s 4 3
Mycobacterium tuberculosis 2099HD s 4 3
Sebaldella termitidis ATCC 33386 s 4 3
Fusobacterium perfoetens ATCC 29250 s 4 3
Cetobacterium ceti s 4 3
Butyrivibrio sp. AE2032 s 4 3
Tissierellia bacterium S5-A11 s 8 4
Cetobacterium sp. ZOR0034 s 4 3
Cetobacterium sp. ZWU0022 s 4 3
Listeria monocytogenes s 4 3
Staphylococcus epidermidis s 4 3
Staphylococcus aureus s 4 3
Escherichia coli s 4 3
Citrobacter freundii s 4 3
Enterobacter cloacae subsp. cloacae s 4 3
Listeria monocytogenes s 4 3
Proteus mirabilis s 4 3
Pseudomonas stutzeri s 4 3
Acinetobacter baumannii s 4 3
Escherichia coli s 4 3
Aeromonas hydrophila s 4 3
Escherichia coli s 4 3
Bacillus safensis s 4 3
Escherichia coli s 4 3
Pseudomonas syringae pv. actinidiae s 4 3
Campylobacter coli s 4 3

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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