Metamenu

Effective results for Desulfotomaculum reducens MI-1 (eggnog40)

Summary

Number of putative secreted proteins: 142
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 38 eukaryotic-like domains, contained in 142 proteins (2 high, 140 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
349161.Dred_0143(PF12838) (PF13237)ER; (ER)
349161.Dred_1585(PF02906) (PF12838)(mitochondrial)
349161.Dred_0137(PF12838) (PF13237)ER; (ER)
349161.Dred_0958(PF01478)(ER)
349161.Dred_0951(PF01478)ER
349161.Dred_1330(PF13534)(mitochondrial)
349161.Dred_1543(PF06032)(ER)
349161.Dred_1047(PF01478)ER
349161.Dred_0540(PF01930)ER
349161.Dred_0809(PF01478)ER
349161.Dred_2222(PF01656)(mitochondrial)
349161.Dred_1017(PF09419)(ER)
349161.Dred_2111(PF01478)ER
349161.Dred_0746PF06467ER
349161.Dred_3196(PF01656)(mitochondrial); mitochondrial
349161.Dred_3275(PF10662)mitochondrial; (mitochondrial)
349161.Dred_2705(PF01656)(mitochondrial); (plastid)
349161.Dred_0275(PF02787)(ER)
349161.Dred_2390(PF01656)(mitochondrial)
349161.Dred_1654(PF02906) (PF12838) (PF02256)
349161.Dred_1875(PF14330)(mitochondrial)
349161.Dred_0024(PF13401)(mitochondrial); (plastid)
349161.Dred_0033(PF02371)(mitochondrial)
349161.Dred_1684(PF02787)(ER)
349161.Dred_0829(PF01478)ER
349161.Dred_2965(PF01228) (PF02901)
349161.Dred_0799(PF01656)(ER)
349161.Dred_1315(PF02550) (PF13336)
349161.Dred_1785(PF13336) (PF02550)
349161.Dred_2221(PF13237) (PF01656)
349161.Dred_1810PF03727 PF00349
349161.Dred_2305(PF02906)plastid
349161.Dred_2232(PF02787)(ER)
349161.Dred_0352(PF13336) (PF02550)
349161.Dred_2689(PF05034) (PF07476)
349161.Dred_2210(PF06071)(ER)
349161.Dred_1489(PF02550) (PF13336)
349161.Dred_2715(PF01656)(mitochondrial)
349161.Dred_3290(PF02906) (PF02256)
349161.Dred_3278(PF01228) (PF02901)
349161.Dred_1280(PF06071)(mitochondrial)
349161.Dred_0463(PF02906) (PF02256)
349161.Dred_0382(PF13336) (PF02550)
349161.Dred_1651(PF02906) (PF02256)
349161.Dred_2750(PF01228) (PF02901)
349161.Dred_2753(PF01228) (PF02901)
349161.Dred_0039(PF01228) (PF02901)
349161.Dred_1539(PF12838)plastid
349161.Dred_0950(PF01656)
349161.Dred_0952(PF01656)
349161.Dred_0633(PF13534)
349161.Dred_3200(PF13237)
349161.Dred_1546(PF06032)
349161.Dred_0010(PF01680)
349161.Dred_2150(PF06968)
349161.Dred_2151(PF06968)
349161.Dred_0499(PF05168)
349161.Dred_1304(PF06249)
349161.Dred_1302(PF13534)
349161.Dred_0150(PF01969)
349161.Dred_2098(PF13401)
349161.Dred_1826(PF02371)
349161.Dred_0802(PF01656)
349161.Dred_0800(PF01656)
349161.Dred_0801(PF01656)
349161.Dred_0146(PF13534)
349161.Dred_0142(PF13534)
349161.Dred_0363(PF01597)
349161.Dred_0361(PF05935)
349161.Dred_3317(PF01969)
349161.Dred_2041(PF12838)
349161.Dred_2940(PF03063)
349161.Dred_1794(PF02906)
349161.Dred_0770(PF02371)
349161.Dred_0358(PF13534)
349161.Dred_2543(PF01656)
349161.Dred_0998(PF12255)
349161.Dred_0999(PF03538)
349161.Dred_2937(PF13237)
349161.Dred_2938(PF03063)
349161.Dred_0423(PF03063)
349161.Dred_2336(PF16760)
349161.Dred_0697(PF12838)
349161.Dred_0349(PF02371)
349161.Dred_2115(PF01656)
349161.Dred_1909(PF02371)
349161.Dred_1904(PF01656)
349161.Dred_1009(PF13401)
349161.Dred_1006(PF01930)
349161.Dred_0430(PF06968)
349161.Dred_1351(PF02371)
349161.Dred_0533(PF13401)
349161.Dred_2719(PF02421)
349161.Dred_0525(PF05168)
349161.Dred_0415(PF01680)
349161.Dred_0087(PF02371)
349161.Dred_0648(PF02421)
349161.Dred_0395(PF06032)
349161.Dred_3270(PF13534)
349161.Dred_3277(PF12838)
349161.Dred_2015(PF02371)
349161.Dred_1286(PF13401)
349161.Dred_0466(PF13237)
349161.Dred_0721(PF01597)
349161.Dred_0658(PF01656)
349161.Dred_0652(PF03063)
349161.Dred_0657(PF01656)
349161.Dred_0074(PF06968)
349161.Dred_3268(PF06249)
349161.Dred_1625(PF01930)
349161.Dred_1624(PF02371)
349161.Dred_0661(PF02421)
349161.Dred_2258(PF13401)
349161.Dred_2723(PF02421)
349161.Dred_2822(PF12838)
349161.Dred_0050(PF12838)
349161.Dred_2755(PF02901)
349161.Dred_2836(PF01597)
349161.Dred_1649(PF12838)
349161.Dred_0605(PF01597)
349161.Dred_0607(PF05935)
349161.Dred_3012(PF05168)
349161.Dred_2829(PF02371)
349161.Dred_3236(PF13401)
349161.Dred_0896(PF05168)
349161.Dred_2990(PF00162)
349161.Dred_0617(PF01680)
349161.Dred_3000(PF01656)
349161.Dred_1454(PF02371)
349161.Dred_0102(PF12838)
349161.Dred_3228(PF05935)
349161.Dred_1856(PF12838)
349161.Dred_0850(PF02371)
349161.Dred_0857(PF02371)
349161.Dred_1325(PF13534)
349161.Dred_1327(PF12838)
349161.Dred_1328(PF12838)
349161.Dred_1440(PF02906)
349161.Dred_0139(PF13534)
349161.Dred_1449(PF02371)
349161.Dred_0133(PF00162)
349161.Dred_1291(PF10662)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================