Effective results for Nitrosospira multiformis ATCC 25196 (eggnog40)

Summary

Number of putative secreted proteins: 85
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 85 proteins (3 high, 82 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
323848.Nmul_A2021				(PF13683)	mitochondrial; (mitochondrial)
323848.Nmul_A0920				(PF00264)	mitochondrial
323848.Nmul_A0251				(PF16332)	(mitochondrial); (ER)
323848.Nmul_A0258				(PF14099)	ER
323848.Nmul_A2460				(PF10042)	(mitochondrial)
323848.Nmul_A1432				(PF13276)	(mitochondrial)
323848.Nmul_A0109				(PF13683)	mitochondrial; (mitochondrial)
323848.Nmul_A1295				(PF13276)	(mitochondrial)
323848.Nmul_A1425				(PF06884)	ER
323848.Nmul_A1166				PF00050	ER
323848.Nmul_A0545				(PF13276)	(mitochondrial)
323848.Nmul_A0845				PF00050	ER
323848.Nmul_A1009				(PF00036)	ER; (ER)
323848.Nmul_A2441				(PF13429)	ER
323848.Nmul_A0976				(PF08964)	ER; (ER)
323848.Nmul_A1735				(PF13429)	ER
323848.Nmul_A0465				(PF00194)	ER; (ER)
323848.Nmul_A0461				(PF00194)	ER
323848.Nmul_A0615				(PF03098)	(mitochondrial)
323848.Nmul_A2025				(PF01527)	(plastid)
323848.Nmul_A2024				(PF13276)	(mitochondrial)
323848.Nmul_A0417				(PF14397)	(plastid)
323848.Nmul_A1442				(PF13276)	(mitochondrial)
323848.Nmul_A2055				(PF13276)	(mitochondrial)
323848.Nmul_A2010				(PF13276)	(mitochondrial)
323848.Nmul_A1301				(PF13276) (PF13683)
323848.Nmul_A0138				(PF13276) (PF13683)
323848.Nmul_A1484				(PF13276) (PF13683)
323848.Nmul_A2405				(PF13276)	(mitochondrial)
323848.Nmul_A2432				(PF03537)	plastid
323848.Nmul_A0168				(PF13276)	(mitochondrial)
323848.Nmul_A0169				(PF01527)	(plastid)
323848.Nmul_A1570				(PF13276)	(mitochondrial)
323848.Nmul_A2174				(PF13276)	(mitochondrial)
323848.Nmul_A2173				(PF01527)	(plastid)
323848.Nmul_A1736				(PF03537)	(mitochondrial)
323848.Nmul_A0054				(PF01527)	(plastid)
323848.Nmul_A0055				(PF13276)	(mitochondrial)
323848.Nmul_A2022				(PF01527)
323848.Nmul_A1443				(PF01527)
323848.Nmul_A1458				(PF14099)
323848.Nmul_A1456				(PF14099)
323848.Nmul_A1693				(PF13683)
323848.Nmul_A1696				(PF13683)
323848.Nmul_A1694				(PF01527)
323848.Nmul_A2009				(PF13683)
323848.Nmul_A2008				(PF14397)
323848.Nmul_A2266				(PF00862)
323848.Nmul_A0424				(PF14397)
323848.Nmul_A2011				(PF01527)
323848.Nmul_A1431				(PF01527)
323848.Nmul_A1300				(PF01527)
323848.Nmul_A2208				(PF13551)
323848.Nmul_A0137				(PF01527)
323848.Nmul_A0355				(PF14721)
323848.Nmul_A1637				(PF01527)
323848.Nmul_A1248				(PF13551)
323848.Nmul_A0594				(PF13683)	not used
323848.Nmul_A2457				(PF10042)
323848.Nmul_A2054				(PF13683)
323848.Nmul_A2056				(PF01527)
323848.Nmul_A1434				(PF13551)
323848.Nmul_A0108				(PF01527)
323848.Nmul_A1297				(PF13276)
323848.Nmul_A1296				(PF01527)
323848.Nmul_A0956				(PF03092)
323848.Nmul_A1428				(PF13551)
323848.Nmul_A2438				(PF03537)
323848.Nmul_A2098				(PF13551)
323848.Nmul_A2096				(PF13551)
323848.Nmul_A1569				(PF13683)
323848.Nmul_A0546				(PF01527)
323848.Nmul_A2159				PF04457
323848.Nmul_A2158				(PF05189)
323848.Nmul_A2406				(PF01527)
323848.Nmul_A2156				(PF00264)
323848.Nmul_A1373				(PF12255)
323848.Nmul_A1571				(PF01527)
323848.Nmul_A0533				(PF03098)
323848.Nmul_A0532				(PF00305)
323848.Nmul_A0527				(PF00264)
323848.Nmul_A0868				(PF13436)
323848.Nmul_A1483				(PF01527)
323848.Nmul_A0282				(PF03031)
323848.Nmul_A1441				(PF13683)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================