Effective results for Mariprofundus ferrooxydans PV-1 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 35 proteins (3 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
314345.SPV1_07876				(PF05036)	ER
314345.SPV1_06424				(PF01223)	ER
314345.SPV1_04263				(PF01223)	ER
314345.SPV1_09468				(PF05036)	ER
314345.SPV1_12480				(PF13488)	ER
314345.SPV1_12907				(PF13488)	(ER)
314345.SPV1_08346				(PF03219)	ER
314345.SPV1_04378				(PF14269)	ER
314345.SPV1_08421				(PF13488)	ER
314345.SPV1_13694				(PF01223)	ER
314345.SPV1_07224				(PF03350)	ER; (mitochondrial)
314345.SPV1_07426				(PF14269)	ER
314345.SPV1_13619				(PF03350)	(ER)
314345.SPV1_09608				(PF13281)
314345.SPV1_00972				PF07914
314345.SPV1_13172				(PF12899)
314345.SPV1_06389				PF03031
314345.SPV1_14304				(PF14721)
314345.SPV1_00817				(PF05036)
314345.SPV1_13552				(PF05036)
314345.SPV1_10561				(PF02943)
314345.SPV1_14229				(PF03350)
314345.SPV1_10431				(PF05036)
314345.SPV1_00822				(PF05036)
314345.SPV1_05367				(PF14336)
314345.SPV1_14234				(PF03350)
314345.SPV1_03313				(PF05036)
314345.SPV1_00667				(PF00025)
314345.SPV1_10396				PF03031
314345.SPV1_03073				(PF13488)
314345.SPV1_05263				(PF05036)
314345.SPV1_07199				(PF05036)
314345.SPV1_07966				(PF03219)
314345.SPV1_04053				(PF05036)
314345.SPV1_13582				(PF05036)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================