Metamenu

Effective results for Synechococcus sp. BL107 (eggnog40)

Summary

Number of putative secreted proteins: 134
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 102 eukaryotic-like domains, contained in 134 proteins (14 high, 120 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
313625.BL107_09906(PF16639) (PF01333)ER
313625.BL107_12740(PF10693)(ER)
313625.BL107_08801(PF12046)ER
313625.BL107_17105(PF07444)ER
313625.BL107_16675(PF11805)ER; (ER)
313625.BL107_08129(PF01716)ER
313625.BL107_04827(PF06514)ER
313625.BL107_06219(PF01737)ER
313625.BL107_16240(PF11317)ER
313625.BL107_08049(PF07444)ER
313625.BL107_08104(PF04483)ER
313625.BL107_10761(PF13355)(mitochondrial); (plastid)
313625.BL107_14510(PF11460)ER
313625.BL107_14515(PF10716)ER
313625.BL107_16690(PF13759)(ER)
313625.BL107_13180(PF04483)(mitochondrial); mitochondrial
313625.BL107_11601PF06298ER
313625.BL107_15265(PF13911)(mitochondrial); ER
313625.BL107_05314(PF02533)ER
313625.BL107_15145(PF12452)ER
313625.BL107_09962(PF02507)ER
313625.BL107_11736(PF01789)ER
313625.BL107_06734(PF16166)ER
313625.BL107_10282(PF13326)mitochondrial
313625.BL107_12735(PF12159)ER
313625.BL107_14820(PF06799)ER
313625.BL107_16870(PF03567)(mitochondrial)
313625.BL107_10916(PF09996)(mitochondrial)
313625.BL107_13115(PF11152)mitochondrial; (mitochondrial)
313625.BL107_08551PF00828(mitochondrial)
313625.BL107_17100(PF06596)ER; not used
313625.BL107_07924(PF02468)ER; not used
313625.BL107_08234(PF09366)(mitochondrial)
313625.BL107_05504(PF00284) (PF00283)
313625.BL107_05509(PF00283)(ER); not used
313625.BL107_12255(PF07082)(mitochondrial)
313625.BL107_15700(PF08041)ER; not used
313625.BL107_09211(PF02427)(mitochondrial)
313625.BL107_13015(PF09996)(ER)
313625.BL107_05809(PF11623)(plastid)
313625.BL107_06259(PF04481)(mitochondrial)
313625.BL107_13920PF06298ER; not used
313625.BL107_15970(PF11341)
313625.BL107_13235(PF11210)
313625.BL107_07909(PF12600)
313625.BL107_10636(PF12204)
313625.BL107_04904(PF05421)
313625.BL107_14635(PF13759)
313625.BL107_13820(PF11282)
313625.BL107_07934(PF00737)
313625.BL107_14260(PF00124)
313625.BL107_13685(PF05996)
313625.BL107_05519(PF01788)
313625.BL107_05514PF02419not used
313625.BL107_09186(PF12899)
313625.BL107_09316(PF10063)
313625.BL107_11151(PF13355)
313625.BL107_14305(PF08854)
313625.BL107_12930(PF09353)
313625.BL107_12845(PF11360)
313625.BL107_08676(PF10999)not used
313625.BL107_05154(PF10664)
313625.BL107_05159(PF11371)
313625.BL107_14660(PF01744)
313625.BL107_07124PF00504
313625.BL107_14680(PF08417)
313625.BL107_05369(PF03492)
313625.BL107_05784(PF03567)
313625.BL107_09336(PF00124)
313625.BL107_05269(PF09366)
313625.BL107_11551PF00504not used
313625.BL107_13400(PF11833)
313625.BL107_09937(PF11267)not used
313625.BL107_08651(PF12617)
313625.BL107_08871(PF06206)
313625.BL107_12665(PF11264)
313625.BL107_05044(PF13759)
313625.BL107_05049(PF00124)
313625.BL107_08891(PF05996)
313625.BL107_16120(PF11998)
313625.BL107_15475(PF02529)not used
313625.BL107_08646(PF11909)
313625.BL107_12675(PF10013)not used
313625.BL107_15725(PF02392)
313625.BL107_09351(PF00124)
313625.BL107_15120(PF12527)
313625.BL107_08886(PF05996)
313625.BL107_06154(PF03567)
313625.BL107_17185(PF02943)
313625.BL107_16560(PF02941)
313625.BL107_13195(PF05969)not used
313625.BL107_15915(PF09366)
313625.BL107_08414(PF00223)
313625.BL107_04889(PF12095)
313625.BL107_08524PF00828not used
313625.BL107_15730(PF00124)
313625.BL107_10501(PF08847)
313625.BL107_07239(PF01947)
313625.BL107_15450(PF14159)
313625.BL107_15855(PF08853)
313625.BL107_08409(PF00223)
313625.BL107_13700(PF11347)
313625.BL107_12650PF03742not used
313625.BL107_15705PF02005
313625.BL107_04989(PF11910)
313625.BL107_09111(PF05151)not used
313625.BL107_09972PF00504
313625.BL107_10247(PF11016)
313625.BL107_12395(PF11947)
313625.BL107_08189(PF03567)
313625.BL107_08986(PF06206)
313625.BL107_17370PF00504not used
313625.BL107_13385(PF12049)
313625.BL107_08429(PF00796)not used
313625.BL107_08424(PF02605)
313625.BL107_08771(PF02531)
313625.BL107_12520PF00504
313625.BL107_09551PF00504not used
313625.BL107_09957(PF01701)not used
313625.BL107_16030(PF04983)
313625.BL107_16035(PF04983)
313625.BL107_13130(PF03040)
313625.BL107_08169(PF00124)
313625.BL107_08701(PF14159)
313625.BL107_15370(PF13759)
313625.BL107_16990(PF12204)
313625.BL107_14915(PF01786)
313625.BL107_16280(PF08855)
313625.BL107_08179(PF00124)
313625.BL107_07869(PF11378)
313625.BL107_17120PF00504
313625.BL107_11666(PF10674)
313625.BL107_10766(PF00940)
313625.BL107_16615(PF04839)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================