Metamenu

Effective results for Corynebacterium jeikeium K411 (eggnog40)

Summary

Number of putative secreted proteins: 94
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 94 proteins (77 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
306537.jk1403PF13276 (PF00665)mitochondrial
306537.jk1786PF00872mitochondrial; (mitochondrial)
306537.jk1496(PF01195)mitochondrial; plastid
306537.jk1405(PF00665)mitochondrial
306537.jk0095PF13276 (PF00665)
306537.jk1258PF13276 (PF00665)
306537.jk0652PF13276(mitochondrial)
306537.jk1228PF13276 (PF00665)
306537.jk1134PF13276(mitochondrial)
306537.jk1355(PF13936) (PF00665)
306537.jk1356PF13518 (PF00665)
306537.jk0529PF13518 (PF00665)
306537.jk1232PF13276 (PF00665)
306537.jk0530PF13518 (PF00665)
306537.jk0621(PF13936) (PF00665)
306537.jk0627(PF13936) (PF00665)
306537.jk0433PF13518 (PF00665)
306537.jk1582PF13276 (PF00665)
306537.jk1589PF13276 (PF00665)
306537.jk1561PF13276(mitochondrial)
306537.jk0511PF13276 (PF00665)
306537.jk1768(PF00665)(mitochondrial)
306537.jk1769PF13276 (PF00665)
306537.jk0015(PF13936) (PF00665)
306537.jk0021(PF13936) (PF00665)
306537.jk1244PF13276 (PF00665)
306537.jk1260PF13276 (PF00665)
306537.jk0697PF13276 (PF00665)
306537.jk1790PF13276 (PF00665)
306537.jk0472PF13276(mitochondrial)
306537.jk1259PF00872
306537.jk0092PF00872
306537.jk1787PF00872
306537.jk1784PF00872
306537.jk1785PF00872
306537.jk0651PF13518
306537.jk0460PF00872
306537.jk1226PF00872
306537.jk1137PF08068
306537.jk1133PF13518
306537.jk1904PF08213not used
306537.jk1230PF00872
306537.jk0633PF00872
306537.jk0531PF00872
306537.jk0337PF00872
306537.jk1579PF00872
306537.jk1804PF13518
306537.jk0509PF00872
306537.jk0586PF00872
306537.jk1103(PF17048)
306537.jk1581(PF13936)
306537.jk1585(PF00665)
306537.jk1586PF00872
306537.jk1560PF13518
306537.jk2040PF00872
306537.jk1823PF13276
306537.jk1822PF13518
306537.jk1771PF00872
306537.jk0513PF00872
306537.jk1945PF00872
306537.jk1382PF00872
306537.jk0389PF00872
306537.jk0388PF13276
306537.jk0386PF00872
306537.jk1495(PF01195)
306537.jk0370PF00872
306537.jk1620PF00872
306537.jk1713PF13518
306537.jk1714PF13276
306537.jk0390(PF00665)
306537.jk0391PF00872
306537.jk0815(PF00665)
306537.jk0360PF00872
306537.jk0923(PF16715)
306537.jk1803PF13276
306537.jk1992PF00872
306537.jk0153PF00872
306537.jk1602PF00872
306537.jk1601PF00872
306537.jk1280PF00872
306537.jk0044PF00872
306537.jk1262PF00872
306537.jk0692(PF00665)
306537.jk0691PF13276
306537.jk1278PF00872
306537.jk1279PF00872
306537.jk1096PF00872
306537.jk2029PF00872
306537.jk0062PF00872
306537.jk1243PF00872
306537.jk0663PF00872
306537.jk2016(PF00665)
306537.jk0471PF13518
306537.jk0470PF00872

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================