Metamenu

Effective results for Photobacterium profundum SS9 (eggnog40)

Summary

Number of putative secreted proteins: 305
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 305 proteins (229 high, 76 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
298386.PBPRA1538PF13551 PF13592 PF13358mitochondrial
298386.PBPRB1798PF13551 PF13592 PF13358mitochondrial; (mitochondrial)
298386.PBPRB1223PF13551 PF13592 PF13358mitochondrial
298386.PBPRA0689(PF13087) (PF13086)mitochondrial
298386.PBPRB0826PF12762(ER)
298386.PBPRB0595PF13551 PF13592 PF13358
298386.PBPRB0831PF13551 PF13592 PF13358
298386.PBPRA3208(PF02810)(mitochondrial)
298386.PBPRA0476(PF00696)(mitochondrial)
298386.PBPRA2611(PF02810)(ER)
298386.PBPRB1688PF01609(mitochondrial); mitochondrial
298386.PBPRB1454PF13551 PF13592 PF13358
298386.PBPRA0267(PF00696)(ER)
298386.PBPRA2996(PF00696)mitochondrial; (mitochondrial)
298386.PBPRB1522PF13551 PF13592 PF13358
298386.PBPRA1433(PF03222)ER
298386.PBPRA3385(PF01168)ER
298386.PBPRB1784(PF00696)(mitochondrial)
298386.PBPRB0306(PF03552)ER
298386.PBPRB1941(PF01117)ER
298386.PBPRA1712PF13551 PF13592 PF13358
298386.PBPRA1374PF13551 PF13592 PF13358
298386.PBPRB1410PF13551 PF13592 PF13358
298386.PBPRB1488PF13551 PF13592 PF13358
298386.PBPRB1952(PF01168)ER
298386.PBPRA1380(PF03724)ER
298386.PBPRA1702PF13551 PF13592 PF13358
298386.PBPRB0192PF03050mitochondrial; plastid
298386.PBPRB1964PF01609ER
298386.PBPRB1963(PF00031)mitochondrial
298386.PBPRA1588PF01609(mitochondrial)
298386.PBPRA1243(PF03724)ER
298386.PBPRB0657PF01609mitochondrial
298386.PBPRB0658PF01609(mitochondrial); mitochondrial
298386.PBPRB0864PF12762mitochondrial; (mitochondrial)
298386.PBPRA1921(PF08180)ER
298386.PBPRB1927PF03050ER
298386.PBPRB0522(PF03724)ER
298386.PBPRA1643(PF02810)(mitochondrial)
298386.PBPRA1269PF12762mitochondrial; (mitochondrial)
298386.PBPRB0671PF03050ER
298386.PBPRB0841PF13551 PF13592 PF13358
298386.PBPRA2462(PF03724)ER
298386.PBPRA2201(PF05222)(mitochondrial)
298386.PBPRA0079PF13384 PF13592
298386.PBPRA0104PF01609plastid
298386.PBPRB1069PF01609(plastid)
298386.PBPRB0832PF01609(mitochondrial)
298386.PBPRA1441(PF02810)(mitochondrial)
298386.PBPRA1990(PF00696)(mitochondrial)
298386.PBPRA2533(PF03222)(ER)
298386.PBPRA2627(PF13023)(mitochondrial)
298386.PBPRA2757PF01609plastid
298386.PBPRB1785(PF00709)(ER)
298386.PBPRA3106PF01609plastid
298386.PBPRB0924PF13384 PF13592
298386.PBPRB0815PF01609(mitochondrial)
298386.PBPRB0814PF01609(plastid)
298386.PBPRB1141PF01609plastid
298386.PBPRB0496PF01609plastid
298386.PBPRB1446PF13384 PF13592
298386.PBPRA3553PF13384 PF13592
298386.PBPRA3010PF13384 PF13592
298386.PBPRB1781PF13384 PF13592
298386.PBPRA0713PF13384 PF13592
298386.PBPRB0942PF13358(mitochondrial)
298386.PBPRB0941PF13384 PF13592
298386.PBPRB1307PF01609(plastid)
298386.PBPRA2372PF13384 PF13592
298386.PBPRB1828PF13551 PF13592
298386.PBPRA0367PF13384 PF13592
298386.PBPRA1709PF01609plastid
298386.PBPRA1362PF13384 PF13592
298386.PBPRA3143(PF01168)plastid
298386.PBPRA3034(PF05222)(mitochondrial)
298386.PBPRA3451PF01609(plastid)
298386.PBPRA0552(PF00696)(mitochondrial)
298386.PBPRB1589PF01609(plastid)
298386.PBPRA0082PF13384 PF13592
298386.PBPRB0965PF01609plastid
298386.PBPRA1593(PF13087) (PF13086)
298386.PBPRB0189PF01609(plastid)
298386.PBPRB0188PF03050(ER)
298386.PBPRB0225PF01609plastid
298386.PBPRA1900PF01609(plastid)
298386.PBPRA2124PF01609plastid
298386.PBPRA1581PF01609plastid
298386.PBPRA1584(PF13087) (PF13086)
298386.PBPRA3298PF13384 PF13592
298386.PBPRA1333PF01609plastid
298386.PBPRA2820(PF03724)(plastid)
298386.PBPRB0085PF13384 PF13592
298386.PBPRB0885PF01609plastid
298386.PBPRB1357PF01609plastid
298386.PBPRB1353PF01609plastid
298386.PBPRA1325PF01609plastid
298386.PBPRA0688PF01609(plastid)
298386.PBPRA0514PF01609plastid
298386.PBPRA0513PF13384 PF13592
298386.PBPRA1310(PF00772)(mitochondrial)
298386.PBPRB1202PF01609plastid
298386.PBPRA1784PF01609(plastid)
298386.PBPRA2783(PF01168)(mitochondrial)
298386.PBPRA0078PF13358
298386.PBPRB0821PF01609
298386.PBPRB0910PF01609
298386.PBPRB0917PF01609
298386.PBPRA2412(PF03222)
298386.PBPRA1219PF03050
298386.PBPRA2840(PF03222)
298386.PBPRB1068(PF00388)
298386.PBPRB0620PF03050
298386.PBPRB1475PF01609
298386.PBPRA3345(PF00709)
298386.PBPRB1984PF03050
298386.PBPRA0488PF01609
298386.PBPRA0245PF01609
298386.PBPRB1502(PF03848)
298386.PBPRB0839PF01609
298386.PBPRB0838PF03050
298386.PBPRB0836PF03050
298386.PBPRB0835PF03050
298386.PBPRB0833PF03050
298386.PBPRB0830PF13358
298386.PBPRB0902(PF05222)
298386.PBPRB0451PF03050
298386.PBPRB1699PF01609
298386.PBPRB1694PF03050
298386.PBPRB1697PF01609
298386.PBPRB1687PF01609
298386.PBPRB1468PF03050
298386.PBPRB0023PF03050
298386.PBPRB1996PF03050
298386.PBPRA1935PF12762
298386.PBPRA2612(PF08732)
298386.PBPRA0727(PF13291)
298386.PBPRB1268(PF13291)
298386.PBPRB1199PF01609
298386.PBPRB1689(PF02810)
298386.PBPRA2966(PF00696)
298386.PBPRB1452PF01609
298386.PBPRB1455PF01609
298386.PBPRB1851PF01609
298386.PBPRA0919PF01609
298386.PBPRB1525PF12762
298386.PBPRB1523PF01609
298386.PBPRA0262(PF00696)
298386.PBPRB1453PF03050
298386.PBPRA0869PF01609
298386.PBPRB0923PF13358
298386.PBPRA2426PF01609
298386.PBPRA2288(PF10462)
298386.PBPRA1956PF03050
298386.PBPRA1885PF03050
298386.PBPRA2600PF01609
298386.PBPRB1148PF03050
298386.PBPRB1448PF01609
298386.PBPRA2979PF01609
298386.PBPRA3554PF13358
298386.PBPRA3552PF03050
298386.PBPRA3550PF03050
298386.PBPRB0317PF03050
298386.PBPRB1850(PF01168)
298386.PBPRB0953PF13551
298386.PBPRA1437PF01609
298386.PBPRA1093(PF02810)
298386.PBPRA1720(PF03552)
298386.PBPRA3548PF12762
298386.PBPRA3011PF13358
298386.PBPRB1782PF13358
298386.PBPRB1780PF01609
298386.PBPRB1786(PF00709)
298386.PBPRB0301PF03050
298386.PBPRB0300PF03050
298386.PBPRA0712PF13358
298386.PBPRA0714PF13384
298386.PBPRB0540PF01609
298386.PBPRA1973PF03050
298386.PBPRA2375PF03050
298386.PBPRA2373PF13358
298386.PBPRB1162PF01609
298386.PBPRB1797PF01609
298386.PBPRB1799PF13358
298386.PBPRB1829PF13358
298386.PBPRB1485PF01609
298386.PBPRB1487(PF00696)
298386.PBPRA0366PF13358
298386.PBPRA0368PF13358
298386.PBPRA1388PF01609
298386.PBPRA1387PF03050
298386.PBPRB1228(PF03848)
298386.PBPRB1312(PF00772)
298386.PBPRA1701PF03050
298386.PBPRA1703PF12762
298386.PBPRA1706PF03050
298386.PBPRA1363PF13358
298386.PBPRA1569PF01609
298386.PBPRA1568PF03050
298386.PBPRA3525PF03050
298386.PBPRA3450PF01609
298386.PBPRA0392PF01609
298386.PBPRA0081PF13358
298386.PBPRB0989PF03050
298386.PBPRB1360PF01609
298386.PBPRA1917(PF13023)
298386.PBPRA1608PF03050
298386.PBPRA1590PF03050
298386.PBPRA1820PF03050
298386.PBPRA1825PF03050
298386.PBPRA2806PF03050
298386.PBPRA2805PF03050
298386.PBPRA2734PF01609
298386.PBPRA2731(PF01168)
298386.PBPRB1102(PF05222)
298386.PBPRB0185PF03050
298386.PBPRB1777PF01609
298386.PBPRB1416(PF05222)
298386.PBPRB1974PF01609
298386.PBPRA0980PF12762
298386.PBPRA0189(PF13291)
298386.PBPRA1160(PF05222)
298386.PBPRB1378PF12762
298386.PBPRA1761PF12762
298386.PBPRB1484PF03050
298386.PBPRA1341PF03050
298386.PBPRA1345(PF03222)
298386.PBPRA1580PF01609
298386.PBPRA1587PF01609
298386.PBPRB0429PF01609
298386.PBPRB0073PF12762
298386.PBPRA3297PF13358
298386.PBPRA3296PF13592
298386.PBPRA3293(PF00696)
298386.PBPRA2054PF01609
298386.PBPRA3299PF13358
298386.PBPRB0734PF03050
298386.PBPRB0733PF03050
298386.PBPRB1741(PF00755)
298386.PBPRB0346PF03050
298386.PBPRB0343PF03050
298386.PBPRB1447PF13358
298386.PBPRB0232PF03050
298386.PBPRA0358PF12762
298386.PBPRA0194(PF02810)
298386.PBPRA1755PF03050
298386.PBPRA1626PF01609
298386.PBPRA1627PF01609
298386.PBPRA1937PF03050
298386.PBPRA1589PF01609
298386.PBPRB0726PF03050
298386.PBPRA3066(PF00696)
298386.PBPRB1755PF03050
298386.PBPRA3082(PF13291)
298386.PBPRB0659PF13592
298386.PBPRB1918(PF00696)
298386.PBPRB0084PF13358
298386.PBPRB0881PF03050
298386.PBPRB0886PF03050
298386.PBPRB0866(PF00388)
298386.PBPRB0867PF13358
298386.PBPRB0868PF01609
298386.PBPRB1359PF03050
298386.PBPRB1358PF01609
298386.PBPRB0532PF03050
298386.PBPRB0533PF01609
298386.PBPRB0534PF03050
298386.PBPRA1637PF01609
298386.PBPRB1136PF03050
298386.PBPRA1811PF01609
298386.PBPRB1724PF12762
298386.PBPRB1439(PF00772)
298386.PBPRA0512PF13358
298386.PBPRB0099PF01609
298386.PBPRA1796(PF13087)
298386.PBPRA1488PF01609
298386.PBPRA1641PF01609
298386.PBPRA1318PF03050
298386.PBPRB1383PF01609
298386.PBPRA2662PF03050
298386.PBPRA3330(PF01168)
298386.PBPRA3331(PF00772)
298386.PBPRA0839(PF00696)
298386.PBPRA0834PF12762
298386.PBPRB0069PF01609
298386.PBPRB0280(PF01168)
298386.PBPRA1490PF03050
298386.PBPRA1270(PF01168)
298386.PBPRB1398PF01609
298386.PBPRB1391PF12762
298386.PBPRB1642(PF13023)
298386.PBPRB1708PF01609
298386.PBPRB1709PF03050
298386.PBPRB1700PF03050
298386.PBPRB1705PF01609
298386.PBPRB0609PF01609
298386.PBPRB0297PF01609
298386.PBPRB0295PF03050
298386.PBPRA1640PF12762
298386.PBPRA2465(PF03222)
298386.PBPRB1567PF01609
298386.PBPRB1070PF01609
298386.PBPRB1071PF03050
298386.PBPRB1072PF01609
298386.PBPRB1719PF03050
298386.PBPRB1713PF12762

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.75 (14/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================