Metamenu

Effective results for Mycoplasma mycoides subsp. mycoides SC str. PG1 (eggnog40)

Summary

Number of putative secreted proteins: 110
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 110 proteins (90 high, 20 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
272632.MSC_0141PF13518(mitochondrial); mitochondrial
272632.MSC_0419PF03382ER
272632.MSC_0203PF03382(mitochondrial); mitochondrial
272632.MSC_0209PF03382ER
272632.MSC_0663(PF13276)mitochondrial
272632.MSC_0662PF13518(mitochondrial); mitochondrial
272632.MSC_0844(PF13276)mitochondrial
272632.MSC_0082(PF08840)(mitochondrial)
272632.MSC_0630PF13518(mitochondrial); mitochondrial
272632.MSC_0816PF03382ER
272632.MSC_0815PF03382ER
272632.MSC_0812PF03382ER
272632.MSC_0818PF03382ER
272632.MSC_0851PF13518(mitochondrial); mitochondrial
272632.MSC_0173PF13518(ER)
272632.MSC_0174(PF13276)mitochondrial
272632.MSC_0177PF03382ER
272632.MSC_0211(PF13276)mitochondrial
272632.MSC_0674PF13518(mitochondrial); mitochondrial
272632.MSC_0135PF03382ER
272632.MSC_0137(PF13276)mitochondrial
272632.MSC_0136PF03382ER
272632.MSC_0138PF13518(mitochondrial); mitochondrial
272632.MSC_0431PF03382ER
272632.MSC_1005PF03382ER
272632.MSC_0898PF13518(mitochondrial); mitochondrial
272632.MSC_0899(PF13276)mitochondrial
272632.MSC_0246(PF13276)mitochondrial
272632.MSC_1046PF03382ER; (ER)
272632.MSC_0901PF03382ER
272632.MSC_0904(PF13276)mitochondrial
272632.MSC_0905PF13518(mitochondrial); mitochondrial
272632.MSC_0016PF13518(mitochondrial); mitochondrial
272632.MSC_0015(PF13276)mitochondrial
272632.MSC_0653PF03382ER
272632.MSC_0574PF03382(mitochondrial)
272632.MSC_0056PF13518(mitochondrial); mitochondrial
272632.MSC_0055(PF13276)mitochondrial
272632.MSC_0629(PF13276)mitochondrial
272632.MSC_0238PF13518(mitochondrial); mitochondrial
272632.MSC_0239(PF13276)mitochondrial
272632.MSC_0232PF13518(mitochondrial); mitochondrial
272632.MSC_0809PF03382ER; (ER)
272632.MSC_1021PF03382ER; (ER)
272632.MSC_0418PF03382(plastid)
272632.MSC_0813PF03382(ER)
272632.MSC_0810PF03382(ER)
272632.MSC_0449(PF11074)(mitochondrial)
272632.MSC_0060PF01609
272632.MSC_0208PF03382
272632.MSC_0363PF01609
272632.MSC_0661PF03382not used
272632.MSC_0685PF01609
272632.MSC_0969PF01609
272632.MSC_1036PF01609
272632.MSC_0038PF01609
272632.MSC_0551PF01609
272632.MSC_0921PF01609
272632.MSC_0814PF01609
272632.MSC_1011PF01609
272632.MSC_1015(PF03590)
272632.MSC_0070PF01609
272632.MSC_0074PF01609
272632.MSC_0172PF01609
272632.MSC_0605PF01609
272632.MSC_0602PF01609
272632.MSC_0286PF03382
272632.MSC_0672PF01609
272632.MSC_0772PF03382
272632.MSC_0859PF01609
272632.MSC_1056PF01609
272632.MSC_0697PF01609
272632.MSC_0822PF01609
272632.MSC_0820(PF08840)
272632.MSC_0097PF01609
272632.MSC_0098PF01609
272632.MSC_0797PF01609
272632.MSC_0796PF01609
272632.MSC_0862PF01609
272632.MSC_1003PF01609
272632.MSC_0168PF01609
272632.MSC_0342PF01609
272632.MSC_0520PF01609
272632.MSC_0538PF01609
272632.MSC_1040(PF03590)
272632.MSC_0900PF03382
272632.MSC_1031PF01609
272632.MSC_0123PF01609
272632.MSC_0785PF01609
272632.MSC_0781PF01609
272632.MSC_0871PF01609
272632.MSC_0876PF01609
272632.MSC_0970(PF03275)
272632.MSC_0977(PF03275)
272632.MSC_0976PF01609
272632.MSC_0571PF01609
272632.MSC_0332PF01609
272632.MSC_0755PF03382
272632.MSC_0757PF00335
272632.MSC_0522PF03382
272632.MSC_0523PF03382
272632.MSC_0249PF01609
272632.MSC_0934PF01609
272632.MSC_0245PF01609
272632.MSC_0989PF01609
272632.MSC_0981PF01609
272632.MSC_0230PF01609
272632.MSC_0984(PF03275)
272632.MSC_0808PF01609
272632.MSC_0802PF01609

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================