Effective results for Synechococcus elongatus PCC 6301 (eggnog40)

Summary

Number of putative secreted proteins: 132
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 111 eukaryotic-like domains, contained in 132 proteins (5 high, 127 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
269084.syc0319_d(PF16639) (PF01333)mitochondrial
269084.syc0990_c(PF09295)ER
269084.syc0768_c(PF05019)(mitochondrial)
269084.syc1170_c(PF13326)ER
269084.syc1105_d(PF11460)ER
269084.syc2483_c(PF11016)ER
269084.syc1668_d(PF07444)ER
269084.syc1314_d(PF03092)(ER)
269084.syc2417_d(PF11152)ER; (ER)
269084.syc1853_d(PF01737)ER
269084.syc0413_d(PF04481)(mitochondrial); (plastid)
269084.syc1544_cPF05757ER
269084.syc0300_d(PF02507)ER
269084.syc0013_d(PF11264)(mitochondrial)
269084.syc1841_d(PF11623)ER; (ER)
269084.syc1174_c(PF11805)(ER)
269084.syc1218_c(PF01716)ER
269084.syc1707_d(PF03652)(mitochondrial)
269084.syc1104_d(PF10716)ER
269084.syc2080_d(PF07444)ER
269084.syc0854_d(PF12046)ER
269084.syc0621_d(PF12159)ER
269084.syc1864_c(PF11909)(mitochondrial)
269084.syc1319_d(PF16166)(ER)
269084.syc1135_c(PF11317)ER
269084.syc0509_c(PF01789)ER
269084.syc2213_d(PF06514)ER
269084.syc1432_d(PF09366)ER
269084.syc1619_c(PF11910)(mitochondrial)
269084.syc1761_d(PF02605)ER
269084.syc2512_d(PF12483)ER
269084.syc0932_c(PF01169)ER
269084.syc2133_c(PF06298)ER; not used
269084.syc0373_d(PF00284) (PF00283)
269084.syc1698_c(PF13911)(plastid)
269084.syc1289_d(PF02468)ER; not used
269084.syc2521_d(PF02341)(mitochondrial)
269084.syc0385_d(PF09830)(ER)
269084.syc2291_d(PF12452)(ER)
269084.syc1547_c(PF04423)(mitochondrial)
269084.syc0374_d(PF00283)(ER); not used
269084.syc1208_c(PF05019)(mitochondrial)
269084.syc0301_d(PF01701)(mitochondrial); not used
269084.syc2514_c(PF10693)(ER)
269084.syc0057_d(PF09830)
269084.syc0647_c(PF00124)
269084.syc0058_c(PF10013)not used
269084.syc0443_d(PF08847)
269084.syc1708_d(PF12527)
269084.syc0960_c(PF12049)
269084.syc0964_c(PF11833)
269084.syc2077_c(PF11998)
269084.syc0764_d(PF06206)
269084.syc2509_d(PF04983)
269084.syc0375_dPF02419not used
269084.syc2232_c(PF04278)
269084.syc1375_c(PF03652)
269084.syc1452_c(PF03016)
269084.syc2333_d(PF00504)not used
269084.syc0949_c(PF12204)
269084.syc2044_d(PF00223)
269084.syc2106_d(PF01169)
269084.syc2448_d(PF00124)
269084.syc1341_c(PF06799)
269084.syc1248_d(PF11341)
269084.syc1093_c(PF00124)
269084.syc0133_c(PF00101)
269084.syc0418_c(PF02941)
269084.syc2151_d(PF13355)
269084.syc1118_c(PF12899)
269084.syc1152_c(PF02672)
269084.syc0354_c(PF11347)
269084.syc0738_d(PF06206)
269084.syc1270_d(PF00504)not used
269084.syc1538_d(PF08855)
269084.syc2145_c(PF11378)
269084.syc0543_c(PF02531)
269084.syc0870_d(PF10999)
269084.syc2187_d(PF11210)
269084.syc0933_c(PF01169)
269084.syc0873_c(PF00124)
269084.syc0223_c(PF00504)not used
269084.syc0472_c(PF11267)
269084.syc2386_c(PF02532)not used
269084.syc0660_d(PF09366)
269084.syc2228_d(PF08854)
269084.syc2385_c(PF12600)
269084.syc0993_d(PF01501)
269084.syc1760_d(PF00796)not used
269084.syc1676_dPF02005
269084.syc0376_d(PF01788)not used
269084.syc2508_d(PF04983)
269084.syc1800_c(PF11947)
269084.syc1806_c(PF01501)
269084.syc2079_d(PF06596)not used
269084.syc1360_d(PF11282)
269084.syc0524_d(PF07082)
269084.syc0231_c(PF02427)
269084.syc0281_d(PF01501)
269084.syc0765_dPF16865
269084.syc1109_d(PF01241)
269084.syc1413_d(PF01947)
269084.syc0247_d(PF11371)
269084.syc1931_c(PF08417)
269084.syc2045_d(PF00223)
269084.syc1062_c(PF02533)not used
269084.syc2164_c(PF09353)
269084.syc2129_c(PF12095)
269084.syc0831_c(PF05151)not used
269084.syc0556_d(PF10674)
269084.syc2114_d(PF10664)
269084.syc0293_c(PF10184)
269084.syc0553_d(PF03040)
269084.syc0036_d(PF05706)
269084.syc1626_d(PF03912)
269084.syc1157_d(PF05421)
269084.syc0834_d(PF01405)not used
269084.syc1288_c(PF00737)
269084.syc0622_d(PF01241)
269084.syc1680_d(PF08041)not used
269084.syc0900_c(PF12617)
269084.syc0549_c(PF04483)
269084.syc1532_d(PF11360)
269084.syc1758_d(PF04839)
269084.syc2357_c(PF02943)
269084.syc0874_d(PF02392)
269084.syc0166_d(PF00124)
269084.syc2411_c(PF03912)
269084.syc1044_dPF03742not used
269084.syc0129_c(PF00101)
269084.syc1261_d(PF02672)
269084.syc1226_c(PF08853)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================