Effective results for Synechococcus elongatus PCC 6301 (eggnog40)
Summary
Number of putative secreted proteins: 132
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 111 eukaryotic-like domains, contained in 132 proteins (5 high, 127 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 269084.syc0319_d | (PF16639) (PF01333) | mitochondrial | |||
| 269084.syc0990_c | (PF09295) | ER | |||
| 269084.syc0768_c | (PF05019) | (mitochondrial) | |||
| 269084.syc1170_c | (PF13326) | ER | |||
| 269084.syc1105_d | (PF11460) | ER | |||
| 269084.syc2483_c | (PF11016) | ER | |||
| 269084.syc1668_d | (PF07444) | ER | |||
| 269084.syc1314_d | (PF03092) | (ER) | |||
| 269084.syc2417_d | (PF11152) | ER; (ER) | |||
| 269084.syc1853_d | (PF01737) | ER | |||
| 269084.syc0413_d | (PF04481) | (mitochondrial); (plastid) | |||
| 269084.syc1544_c | PF05757 | ER | |||
| 269084.syc0300_d | (PF02507) | ER | |||
| 269084.syc0013_d | (PF11264) | (mitochondrial) | |||
| 269084.syc1841_d | (PF11623) | ER; (ER) | |||
| 269084.syc1174_c | (PF11805) | (ER) | |||
| 269084.syc1218_c | (PF01716) | ER | |||
| 269084.syc1707_d | (PF03652) | (mitochondrial) | |||
| 269084.syc1104_d | (PF10716) | ER | |||
| 269084.syc2080_d | (PF07444) | ER | |||
| 269084.syc0854_d | (PF12046) | ER | |||
| 269084.syc0621_d | (PF12159) | ER | |||
| 269084.syc1864_c | (PF11909) | (mitochondrial) | |||
| 269084.syc1319_d | (PF16166) | (ER) | |||
| 269084.syc1135_c | (PF11317) | ER | |||
| 269084.syc0509_c | (PF01789) | ER | |||
| 269084.syc2213_d | (PF06514) | ER | |||
| 269084.syc1432_d | (PF09366) | ER | |||
| 269084.syc1619_c | (PF11910) | (mitochondrial) | |||
| 269084.syc1761_d | (PF02605) | ER | |||
| 269084.syc2512_d | (PF12483) | ER | |||
| 269084.syc0932_c | (PF01169) | ER | |||
| 269084.syc2133_c | (PF06298) | ER; not used | |||
| 269084.syc0373_d | (PF00284) (PF00283) | ||||
| 269084.syc1698_c | (PF13911) | (plastid) | |||
| 269084.syc1289_d | (PF02468) | ER; not used | |||
| 269084.syc2521_d | (PF02341) | (mitochondrial) | |||
| 269084.syc0385_d | (PF09830) | (ER) | |||
| 269084.syc2291_d | (PF12452) | (ER) | |||
| 269084.syc1547_c | (PF04423) | (mitochondrial) | |||
| 269084.syc0374_d | (PF00283) | (ER); not used | |||
| 269084.syc1208_c | (PF05019) | (mitochondrial) | |||
| 269084.syc0301_d | (PF01701) | (mitochondrial); not used | |||
| 269084.syc2514_c | (PF10693) | (ER) | |||
| 269084.syc0057_d | (PF09830) | ||||
| 269084.syc0647_c | (PF00124) | ||||
| 269084.syc0058_c | (PF10013) | not used | |||
| 269084.syc0443_d | (PF08847) | ||||
| 269084.syc1708_d | (PF12527) | ||||
| 269084.syc0960_c | (PF12049) | ||||
| 269084.syc0964_c | (PF11833) | ||||
| 269084.syc2077_c | (PF11998) | ||||
| 269084.syc0764_d | (PF06206) | ||||
| 269084.syc2509_d | (PF04983) | ||||
| 269084.syc0375_d | PF02419 | not used | |||
| 269084.syc2232_c | (PF04278) | ||||
| 269084.syc1375_c | (PF03652) | ||||
| 269084.syc1452_c | (PF03016) | ||||
| 269084.syc2333_d | (PF00504) | not used | |||
| 269084.syc0949_c | (PF12204) | ||||
| 269084.syc2044_d | (PF00223) | ||||
| 269084.syc2106_d | (PF01169) | ||||
| 269084.syc2448_d | (PF00124) | ||||
| 269084.syc1341_c | (PF06799) | ||||
| 269084.syc1248_d | (PF11341) | ||||
| 269084.syc1093_c | (PF00124) | ||||
| 269084.syc0133_c | (PF00101) | ||||
| 269084.syc0418_c | (PF02941) | ||||
| 269084.syc2151_d | (PF13355) | ||||
| 269084.syc1118_c | (PF12899) | ||||
| 269084.syc1152_c | (PF02672) | ||||
| 269084.syc0354_c | (PF11347) | ||||
| 269084.syc0738_d | (PF06206) | ||||
| 269084.syc1270_d | (PF00504) | not used | |||
| 269084.syc1538_d | (PF08855) | ||||
| 269084.syc2145_c | (PF11378) | ||||
| 269084.syc0543_c | (PF02531) | ||||
| 269084.syc0870_d | (PF10999) | ||||
| 269084.syc2187_d | (PF11210) | ||||
| 269084.syc0933_c | (PF01169) | ||||
| 269084.syc0873_c | (PF00124) | ||||
| 269084.syc0223_c | (PF00504) | not used | |||
| 269084.syc0472_c | (PF11267) | ||||
| 269084.syc2386_c | (PF02532) | not used | |||
| 269084.syc0660_d | (PF09366) | ||||
| 269084.syc2228_d | (PF08854) | ||||
| 269084.syc2385_c | (PF12600) | ||||
| 269084.syc0993_d | (PF01501) | ||||
| 269084.syc1760_d | (PF00796) | not used | |||
| 269084.syc1676_d | PF02005 | ||||
| 269084.syc0376_d | (PF01788) | not used | |||
| 269084.syc2508_d | (PF04983) | ||||
| 269084.syc1800_c | (PF11947) | ||||
| 269084.syc1806_c | (PF01501) | ||||
| 269084.syc2079_d | (PF06596) | not used | |||
| 269084.syc1360_d | (PF11282) | ||||
| 269084.syc0524_d | (PF07082) | ||||
| 269084.syc0231_c | (PF02427) | ||||
| 269084.syc0281_d | (PF01501) | ||||
| 269084.syc0765_d | PF16865 | ||||
| 269084.syc1109_d | (PF01241) | ||||
| 269084.syc1413_d | (PF01947) | ||||
| 269084.syc0247_d | (PF11371) | ||||
| 269084.syc1931_c | (PF08417) | ||||
| 269084.syc2045_d | (PF00223) | ||||
| 269084.syc1062_c | (PF02533) | not used | |||
| 269084.syc2164_c | (PF09353) | ||||
| 269084.syc2129_c | (PF12095) | ||||
| 269084.syc0831_c | (PF05151) | not used | |||
| 269084.syc0556_d | (PF10674) | ||||
| 269084.syc2114_d | (PF10664) | ||||
| 269084.syc0293_c | (PF10184) | ||||
| 269084.syc0553_d | (PF03040) | ||||
| 269084.syc0036_d | (PF05706) | ||||
| 269084.syc1626_d | (PF03912) | ||||
| 269084.syc1157_d | (PF05421) | ||||
| 269084.syc0834_d | (PF01405) | not used | |||
| 269084.syc1288_c | (PF00737) | ||||
| 269084.syc0622_d | (PF01241) | ||||
| 269084.syc1680_d | (PF08041) | not used | |||
| 269084.syc0900_c | (PF12617) | ||||
| 269084.syc0549_c | (PF04483) | ||||
| 269084.syc1532_d | (PF11360) | ||||
| 269084.syc1758_d | (PF04839) | ||||
| 269084.syc2357_c | (PF02943) | ||||
| 269084.syc0874_d | (PF02392) | ||||
| 269084.syc0166_d | (PF00124) | ||||
| 269084.syc2411_c | (PF03912) | ||||
| 269084.syc1044_d | PF03742 | not used | |||
| 269084.syc0129_c | (PF00101) | ||||
| 269084.syc1261_d | (PF02672) | ||||
| 269084.syc1226_c | (PF08853) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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