Metamenu

Effective results for butyrate-producing bacterium SS3/4 (eggnog40)

Summary

Number of putative secreted proteins: 90
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 90 proteins (4 high, 86 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
245014.CK3_29260(PF01554)(ER)
245014.CK3_10390(PF06541)ER
245014.CK3_04080(PF01554)ER
245014.CK3_34390(PF06541)ER
245014.CK3_31850(PF01554)ER
245014.CK3_34860(PF01554)(ER); ER
245014.CK3_14090(PF01554)(ER); ER
245014.CK3_01640(PF01554)ER
245014.CK3_30460(PF06541)ER
245014.CK3_15830(PF01554)(ER)
245014.CK3_08360(PF13539)ER
245014.CK3_07930(PF01554)ER
245014.CK3_05340(PF01554)ER
245014.CK3_07880(PF07687) (PF01546)
245014.CK3_06330(PF07687) (PF01546)
245014.CK3_10140(PF07687) (PF01546)
245014.CK3_22070(PF01554)(ER)
245014.CK3_06300(PF07687) (PF01546)
245014.CK3_35190(PF07687) (PF01546)
245014.CK3_04120(PF07687) (PF01546)
245014.CK3_09840(PF01554)(ER)
245014.CK3_10080(PF07687) (PF01546)
245014.CK3_07950(PF07687) (PF01546)
245014.CK3_20430(PF07687) (PF01546)
245014.CK3_19820(PF07687) (PF01546)
245014.CK3_16680(PF07687) (PF01546)
245014.CK3_19830(PF07687) (PF01546)
245014.CK3_21280(PF01554)(ER)
245014.CK3_06180(PF07687) (PF01546)
245014.CK3_30780(PF07687) (PF01546)
245014.CK3_26940(PF07687) (PF01546)
245014.CK3_00360(PF07687) (PF01546)
245014.CK3_05260(PF07687) (PF01546)
245014.CK3_09610(PF07687) (PF01546)
245014.CK3_09960(PF07687) (PF01546)
245014.CK3_07920(PF07687) (PF01546)
245014.CK3_00550(PF07687) (PF01546)
245014.CK3_01010(PF04422) (PF04432)
245014.CK3_34430(PF07687) (PF01546)
245014.CK3_34610(PF01554)(plastid)
245014.CK3_13590(PF07687) (PF01546)
245014.CK3_08940(PF07687) (PF01546)
245014.CK3_02970(PF09924)(mitochondrial)
245014.CK3_06270(PF09861)(plastid)
245014.CK3_26870(PF07687) (PF01546)
245014.CK3_31810(PF07687) (PF01546)
245014.CK3_21450(PF07687) (PF01546)
245014.CK3_27410(PF12437)
245014.CK3_21300(PF01554)
245014.CK3_05110(PF01546)
245014.CK3_03350(PF01554)
245014.CK3_22540(PF01554)
245014.CK3_28490(PF02475)
245014.CK3_21360(PF13597)
245014.CK3_12000(PF01554)
245014.CK3_00330(PF01554)
245014.CK3_02300(PF13597)
245014.CK3_32190(PF12646)
245014.CK3_00690(PF12437)
245014.CK3_12110(PF13539)
245014.CK3_14460(PF01880)
245014.CK3_26170PF07453
245014.CK3_30440(PF13539)
245014.CK3_33010(PF00847)
245014.CK3_17560(PF01546)
245014.CK3_34150(PF01795)
245014.CK3_35200(PF01554)
245014.CK3_22750(PF13597)
245014.CK3_16310(PF01554)
245014.CK3_04240(PF09861)
245014.CK3_12330(PF03266)
245014.CK3_21390(PF01554)
245014.CK3_15800(PF14336)
245014.CK3_11450(PF04432)
245014.CK3_02940(PF09924)
245014.CK3_33040(PF01554)
245014.CK3_06390PF00910
245014.CK3_16550(PF06541)
245014.CK3_09010(PF09924)
245014.CK3_07380(PF01880)
245014.CK3_17920(PF09861)
245014.CK3_00990(PF04422)
245014.CK3_23590PF00627
245014.CK3_23200(PF01546)
245014.CK3_13340(PF01554)
245014.CK3_21180(PF09924)
245014.CK3_17910(PF07687)
245014.CK3_25820PF11443
245014.CK3_24460(PF01795)
245014.CK3_33890(PF01554)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================