Metamenu

Effective results for Saccharophagus degradans 2-40 (eggnog40)

Summary

Number of putative secreted proteins: 155
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 44 eukaryotic-like domains, contained in 155 proteins (57 high, 98 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
203122.Sde_2927PF05887 (PF00722) (PF11790) (PF00754) PF03422ER
203122.Sde_3612(PF02018) PF03422 (PF00331) (PF00553)mitochondrial
203122.Sde_2308PF03422 PF03211 (PF00553)ER
203122.Sde_3272(PF02018) PF08787 (PF00754)ER
203122.Sde_3021(PF02018) (PF00722) (PF00754)ER
203122.Sde_1444(PF02018) (PF00722) (PF00754)mitochondrial; (mitochondrial)
203122.Sde_2795PF03422 (PF00754)ER
203122.Sde_0943(PF00544) (PF16990)(ER)
203122.Sde_0942(PF00544) (PF16990)ER; (ER)
203122.Sde_2636PF00150 (PF00553)ER; (mitochondrial)
203122.Sde_1507PF08787 (PF00754)ER
203122.Sde_2996PF03422 PF00150ER; (ER)
203122.Sde_2993PF03422 PF00150(ER)
203122.Sde_1393PF03422 (PF02412)ER
203122.Sde_2478PF08787 (PF00754)ER
203122.Sde_2494PF03422 PF00150mitochondrial
203122.Sde_2873PF14592 PF08787ER
203122.Sde_0652(PF00722) PF03422mitochondrial; (ER)
203122.Sde_2929PF03422 PF00150(mitochondrial)
203122.Sde_0064PF00150 (PF00553)mitochondrial
203122.Sde_2934(PF00331) (PF00553)mitochondrial
203122.Sde_0182(PF07632) (PF00553)(ER)
203122.Sde_2832(PF00722) PF03422ER
203122.Sde_3881PF03422 (PF00544)(ER); (plastid)
203122.Sde_2547PF08787 (PF00754)ER
203122.Sde_0034PF14592 (PF00754)ER
203122.Sde_3448(PF00544)ER
203122.Sde_1175PF03422ER
203122.Sde_1177(PF16355)ER
203122.Sde_2633(PF00331)ER
203122.Sde_2947(PF16990)ER
203122.Sde_3927PF03422mitochondrial
203122.Sde_0314(PF00686)ER
203122.Sde_1572PF00150ER
203122.Sde_3591(PF02412)ER
203122.Sde_3701(PF06468)(ER)
203122.Sde_2953(PF07691)ER; (ER)
203122.Sde_3709(PF00754)mitochondrial
203122.Sde_0565(PF07632)ER
203122.Sde_0560(PF03714)ER
203122.Sde_0563PF07821ER
203122.Sde_0569(PF00553)mitochondrial
203122.Sde_3913PF07534ER
203122.Sde_0589(PF03714)ER
203122.Sde_0586(PF02412)ER; (ER)
203122.Sde_3124(PF03662)(mitochondrial)
203122.Sde_3274PF14592ER
203122.Sde_3275PF14592ER
203122.Sde_2878(PF02018) (PF00722) (PF00754)
203122.Sde_1182PF05887 (PF00553)plastid
203122.Sde_1183(PF00553)ER
203122.Sde_1741(PF05875)ER
203122.Sde_3870(PF08329)ER
203122.Sde_3864(PF00520)ER
203122.Sde_3061(PF00457)(mitochondrial)
203122.Sde_2041(PF02018)ER
203122.Sde_0112(PF02018) PF03422(ER)
203122.Sde_0608PF03211ER
203122.Sde_2992PF03422(ER)
203122.Sde_2674(PF07691)(mitochondrial)
203122.Sde_2650PF00150ER
203122.Sde_1503(PF00754)ER
203122.Sde_3121(PF00722)ER
203122.Sde_0633(PF00553)ER; (ER)
203122.Sde_1650(PF00553)(mitochondrial)
203122.Sde_2285PF00150ER
203122.Sde_3003PF03422 PF00150(mitochondrial)
203122.Sde_3007PF03211ER
203122.Sde_2717(PF00121)(mitochondrial); mitochondrial
203122.Sde_3710(PF07745)ER
203122.Sde_3532(PF05057)ER
203122.Sde_1094(PF04820)(mitochondrial)
203122.Sde_1095(PF04820)ER
203122.Sde_2273(PF08662)mitochondrial; (mitochondrial)
203122.Sde_2490PF00150mitochondrial
203122.Sde_3702(PF06468)(ER)
203122.Sde_1703PF03211ER
203122.Sde_1705PF03133mitochondrial; (mitochondrial)
203122.Sde_0650(PF00553)ER
203122.Sde_0656PF00150ER
203122.Sde_1678(PF15071)ER
203122.Sde_1285(PF16355)(ER)
203122.Sde_3023PF03422 PF00150(ER)
203122.Sde_3285PF14592ER; (ER)
203122.Sde_3286PF08787(mitochondrial)
203122.Sde_2860(PF08487)ER
203122.Sde_0701(PF00457)ER
203122.Sde_0242PF03422ER
203122.Sde_3198PF00879ER
203122.Sde_1445(PF11790)ER; (ER)
203122.Sde_2938(PF00686)ER
203122.Sde_2939(PF00553)ER
203122.Sde_0478(PF00754)(ER)
203122.Sde_0475(PF00754)mitochondrial; (mitochondrial)
203122.Sde_0509PF00150ER
203122.Sde_0181(PF00331)ER
203122.Sde_2839PF08787ER
203122.Sde_3982(PF08329)ER; (ER)
203122.Sde_0516(PF05023)ER
203122.Sde_2827(PF07745)ER
203122.Sde_0684(PF16355)ER
203122.Sde_0683(PF07745)ER
203122.Sde_1487(PF07691)ER
203122.Sde_3882(PF16355)ER
203122.Sde_2541PF00150ER
203122.Sde_0216PF03422ER
203122.Sde_0325PF00150ER
203122.Sde_0323(PF00331)ER
203122.Sde_1146(PF07691)ER
203122.Sde_3892PF03422ER; (ER)
203122.Sde_2311PF03422 (PF00553)
203122.Sde_2500(PF07691)(mitochondrial)
203122.Sde_0122(PF08487)(mitochondrial)
203122.Sde_2655PF03422 (PF02412)
203122.Sde_1104(PF04820)(ER)
203122.Sde_1105(PF04820)(ER)
203122.Sde_2807(PF04820)(mitochondrial)
203122.Sde_1051PF03422 (PF00553)
203122.Sde_3420PF00150 (PF00553)
203122.Sde_2828(PF04820)(ER)
203122.Sde_1499(PF05057)(mitochondrial)
203122.Sde_0028(PF05875)
203122.Sde_4005(PF04820)
203122.Sde_3845(PF00754)
203122.Sde_1761(PF00520)
203122.Sde_0318(PF04820)
203122.Sde_3689(PF04493)
203122.Sde_3260PF03422
203122.Sde_0588(PF04820)
203122.Sde_3125(PF04493)
203122.Sde_3277(PF00121)
203122.Sde_2579(PF00520)
203122.Sde_3804(PF07700)
203122.Sde_1398(PF04820)
203122.Sde_3053(PF04820)
203122.Sde_1401(PF04820)
203122.Sde_1096(PF04820)
203122.Sde_2272(PF00553)
203122.Sde_2498(PF04820)
203122.Sde_0424(PF07691)
203122.Sde_1262(PF04820)
203122.Sde_2391(PF04820)
203122.Sde_3289(PF01947)
203122.Sde_1463(PF13875)
203122.Sde_0649(PF00553)
203122.Sde_1294(PF07691)
203122.Sde_2935(PF16355)
203122.Sde_1904(PF00520)
203122.Sde_0693(PF00121)
203122.Sde_2229(PF12038)
203122.Sde_3557(PF07700)
203122.Sde_3239PF00150
203122.Sde_3237PF00150
203122.Sde_3233(PF07691)
203122.Sde_0142(PF08491)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.25 (18/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================