Effective results for Xanthomonas axonopodis pv. citri str. 306 (eggnog40)
Summary
Number of putative secreted proteins: 661
- Predicted by EffectiveT3: 194 (high confidence), 294 (low confidence)
- Predicted by EffectiveCCBD: 10 within, 10 before, 27 behind expected region 25..70aa
- Predicted by T4SEpre: 75
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 99 proteins (25 high, 74 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, Type IV, Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 190486.XAC3505 | (PF14686) (PF09284) (PF14683) | ER | |||
| 190486.XAC3712 | (PF01431) (PF05649) | ER | |||
| 190486.XAC3223 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC2661 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC4323 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC0342 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC2872 | (PF01431) (PF05649) | ER | |||
| 190486.XAC4208 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC2225 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC2131 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC3320 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC3248 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC2101 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC2747 | (PF01431) (PF05649) | ER | |||
| 190486.XAC2746 | (PF01431) (PF05649) | ER | |||
| 190486.XAC2174 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC1071 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC1103 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC1920 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC0153 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC1661 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC1052 | PF13276 (PF00665) | mitochondrial; (mitochondrial) | |||
| 190486.XAC0091 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC3611 | + | (PF04253) | (mitochondrial); plastid | ||
| 190486.XAC2634 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC0578 | PF13276 (PF00665) | (mitochondrial) | |||
| 190486.XAC0591 | (PF00930) | ER | |||
| 190486.XAC1975 | + | (>) | plastid | ||
| 190486.XAC0626 | (PF08212) | ER | |||
| 190486.XAC2532 | (PF00930) | (ER) | |||
| 190486.XAC0756 | (>) | ER | |||
| 190486.XAC1979 | (>) | ER | |||
| 190486.XAC3726 | + | (mitochondrial) | |||
| 190486.XAC2858 | + | (mitochondrial); (plastid) | |||
| 190486.XAC0037 | + | (mitochondrial); (plastid) | |||
| 190486.XAC1505 | (PF00665) | mitochondrial | |||
| 190486.XAC1651 | + | (mitochondrial); mitochondrial | |||
| 190486.XAC1376 | (>) | mitochondrial | |||
| 190486.XAC4106 | (PF00930) | ER | |||
| 190486.XAC0007 | (PF09295) | ER | |||
| 190486.XAC3204 | (>) | ER | |||
| 190486.XAC1483 | + | ER | |||
| 190486.XAC3119 | (PF10142) | ER | |||
| 190486.XAC2465 | (>) | ER | |||
| 190486.XAC2467 | + | (ER) | |||
| 190486.XAC2245 | + | ER | |||
| 190486.XAC2646 | + | + | (plastid) | ||
| 190486.XAC2889 | (+) | (PF00665) | (mitochondrial) | ||
| 190486.XAC3845 | + | mitochondrial; (mitochondrial) | |||
| 190486.XAC3158 | (>) | ER | |||
| 190486.XAC3279 | (>) | ER | |||
| 190486.XAC1694 | (>) | ER; (ER) | |||
| 190486.XAC0838 | + | ER | |||
| 190486.XAC2099 | (+) | (PF00665) | (mitochondrial) | ||
| 190486.XAC3314 | PF03080 | mitochondrial; plastid | |||
| 190486.XAC1685 | (+) | + | (mitochondrial); plastid | ||
| 190486.XAC1684 | + | ER | |||
| 190486.XAC2130 | (<) | mitochondrial | |||
| 190486.XAC0800 | (PF11539) | mitochondrial | |||
| 190486.XAC3058 | + | (mitochondrial) | |||
| 190486.XAC4206 | + | ER | |||
| 190486.XAC0444 | (PF07653) | mitochondrial | |||
| 190486.XAC2424 | (PF00665) | mitochondrial | |||
| 190486.XAC2682 | + | mitochondrial; (mitochondrial) | |||
| 190486.XAC1240 | + | ER | |||
| 190486.XAC4028 | (<) | ER | |||
| 190486.XAC1471 | + | (ER) | |||
| 190486.XAC3999 | (+) | + | ER | ||
| 190486.XAC4046 | (PF00930) | ER | |||
| 190486.XAC0449 | + | (mitochondrial) | |||
| 190486.XAC4342 | + | ER | |||
| 190486.XAC3353 | (PF08332) | ER | |||
| 190486.XAC2358 | + | (mitochondrial) | |||
| 190486.XAC2901 | + | mitochondrial | |||
| 190486.XAC2341 | + | ER | |||
| 190486.XAC3531 | (<) | ER | |||
| 190486.XAC0408 | + | + | (plastid) | ||
| 190486.XAC0400 | + | (mitochondrial) | |||
| 190486.XAC2371 | PF13276 | mitochondrial; (mitochondrial) | |||
| 190486.XAC3284 | (+) | (PF00665) | (mitochondrial) | ||
| 190486.XAC3282 | (+) | + | ER | ||
| 190486.XAC4259 | (PF08212) | ER | |||
| 190486.XAC2399 | (>) | ER | |||
| 190486.XAC2962 | (>) | ER | |||
| 190486.XAC3765 | (+) | (PF00665) | (mitochondrial) | ||
| 190486.XAC2561 | (PF08212) | ER | |||
| 190486.XAC0899 | (PF08332) | ER | |||
| 190486.XAC1137 | + | (mitochondrial) | |||
| 190486.XAC0557 | (PF00328) | ER | |||
| 190486.XAC0555 | + | (mitochondrial) | |||
| 190486.XAC3598 | (>) | ER | |||
| 190486.XAC3943 | (+) | (PF00665) | (mitochondrial) | ||
| 190486.XAC3706 | + | (mitochondrial) | |||
| 190486.XAC2541 | (PF00930) | ER; mitochondrial | |||
| 190486.XAC3232 | + | ER | |||
| 190486.XAC2722 | (>) | mitochondrial | |||
| 190486.XAC3855 | + | ER | |||
| 190486.XAC1977 | + | mitochondrial | |||
| 190486.XAC1974 | + | plastid | |||
| 190486.XAC2531 | (+) | ER | |||
| 190486.XAC0754 | + | (PF00646) | |||
| 190486.XAC1715 | + | + | |||
| 190486.XAC2265 | + | (mitochondrial) | |||
| 190486.XAC2665 | (+) | (ER) | |||
| 190486.XAC3821 | + | plastid | |||
| 190486.XAC3926 | (+) | ER; (mitochondrial) | |||
| 190486.XAC0582 | + | (plastid) | |||
| 190486.XAC2539 | + | plastid | |||
| 190486.XAC4356 | + | (plastid) | |||
| 190486.XAC2529 | + | (ER) | |||
| 190486.XAC4308 | + | plastid | |||
| 190486.XAC3342 | + | (ER) | |||
| 190486.XAC2184 | (+) | mitochondrial | |||
| 190486.XAC2673 | + | (plastid) | |||
| 190486.XAC1509 | (<) | (PF13910) | |||
| 190486.XAC2075 | (+) | mitochondrial; (mitochondrial) | |||
| 190486.XAC1190 | + | (mitochondrial) | |||
| 190486.XAC4031 | + | (plastid) | |||
| 190486.XAC3113 | (+) | (mitochondrial); plastid | |||
| 190486.XAC1208 | + | (plastid) | |||
| 190486.XAC1205 | + | (plastid) | |||
| 190486.XAC1203 | (+) | mitochondrial; plastid | |||
| 190486.XAC3904 | (>) | (plastid) | |||
| 190486.XAC2500 | + | plastid | |||
| 190486.XAC2928 | + | plastid | |||
| 190486.XAC2899 | (+) | (mitochondrial) | |||
| 190486.XAC0925 | (+) | ER | |||
| 190486.XAC1821 | + | (plastid) | |||
| 190486.XAC0247 | + | (>) | |||
| 190486.XAC1556 | + | (plastid) | |||
| 190486.XAC4006 | + | (plastid) | |||
| 190486.XAC0073 | (PF08975) | (mitochondrial) | |||
| 190486.XAC0905 | + | (mitochondrial) | |||
| 190486.XAC3561 | (>) | (mitochondrial) | |||
| 190486.XAC3335 | + | plastid | |||
| 190486.XAC3339 | (>) | (ER) | |||
| 190486.XAC1798 | (+) | mitochondrial; (ER) | |||
| 190486.XAC1383 | + | plastid | |||
| 190486.XAC4172 | + | plastid | |||
| 190486.XAC0456 | + | (plastid) | |||
| 190486.XAC3650 | (<) | + | |||
| 190486.XAC4027 | + | (ER) | |||
| 190486.XAC2432 | PF13276 (PF00665) | ||||
| 190486.XAC3503 | (PF01527) | (plastid) | |||
| 190486.XAC2745 | (PF01431) (PF05649) | ||||
| 190486.XAC1006 | + | (mitochondrial) | |||
| 190486.XAC1002 | (+) | (mitochondrial) | |||
| 190486.XAC0194 | (+) | ER | |||
| 190486.XAC0967 | + | (mitochondrial) | |||
| 190486.XAC2949 | + | (plastid) | |||
| 190486.XAC1462 | + | plastid | |||
| 190486.XAC1072 | + | PF14700 | |||
| 190486.XAC0184 | + | (plastid) | |||
| 190486.XAC0506 | + | (plastid) | |||
| 190486.XAC0721 | + | (mitochondrial) | |||
| 190486.XAC3187 | (>) | (mitochondrial) | |||
| 190486.XAC1679 | (+) | (mitochondrial); (ER) | |||
| 190486.XAC2348 | + | (PF04768) | |||
| 190486.XAC3294 | (+) | (mitochondrial) | |||
| 190486.XAC3569 | (+) | (mitochondrial); (plastid) | |||
| 190486.XAC1294 | + | (ER) | |||
| 190486.XAC4279 | (+) | (mitochondrial) | |||
| 190486.XAC1114 | (+) | (ER); (plastid) | |||
| 190486.XAC3617 | + | plastid | |||
| 190486.XAC3196 | (+) | (mitochondrial); plastid | |||
| 190486.XAC4199 | + | (mitochondrial) | |||
| 190486.XAC2578 | + | (plastid) | |||
| 190486.XAC3376 | (+) | ER | |||
| 190486.XAC2029 | (+) | (PF06884) | (plastid) | ||
| 190486.XAC2024 | + | plastid | |||
| 190486.XAC1287 | (+) | mitochondrial | |||
| 190486.XAC2151 | + | (plastid) | |||
| 190486.XAC2203 | + | plastid | |||
| 190486.XAC0232 | + | (plastid) | |||
| 190486.XAC2969 | (+) | ER | |||
| 190486.XAC0418 | + | (mitochondrial) | |||
| 190486.XAC3386 | + | (mitochondrial) | |||
| 190486.XAC4092 | (+) | (mitochondrial); mitochondrial | |||
| 190486.XAC4079 | (+) | mitochondrial | |||
| 190486.XAC0679 | (+) | (mitochondrial) | |||
| 190486.XAC2145 | (+) | (mitochondrial) | |||
| 190486.XAC0543 | + | + | |||
| 190486.XAC0761 | + | (plastid) | |||
| 190486.XAC3230 | (+) | (PF01129) | (plastid) | ||
| 190486.XAC0286 | + | plastid | |||
| 190486.XAC0599 | + | ||||
| 190486.XAC4233 | + | ||||
| 190486.XAC0112 | + | ||||
| 190486.XAC4299 | + | ||||
| 190486.XAC3221 | (PF01527) | ||||
| 190486.XAC2285 | + | ||||
| 190486.XAC2441 | + | ||||
| 190486.XAC2994 | + | ||||
| 190486.XAC2263 | + | ||||
| 190486.XAC2662 | (PF01527) | ||||
| 190486.XAC3393 | + | ||||
| 190486.XAC1367 | + | ||||
| 190486.XAC1369 | + | ||||
| 190486.XAC3827 | + | ||||
| 190486.XAC3824 | + | ||||
| 190486.XAC1189 | + | ||||
| 190486.XAC1984 | + | ||||
| 190486.XAC1981 | + | ||||
| 190486.XAC1989 | + | ||||
| 190486.XAC0638 | (+) | + | |||
| 190486.XAC2526 | + | ||||
| 190486.XAC0031 | + | ||||
| 190486.XAC3108 | (+) | (mitochondrial) | |||
| 190486.XAC3224 | + | ||||
| 190486.XAC1504 | (PF01527) | ||||
| 190486.XAC1214 | + | ||||
| 190486.XAC1211 | + | ||||
| 190486.XAC1170 | + | ||||
| 190486.XAC1178 | + | ||||
| 190486.XAC0413 | + | ||||
| 190486.XAC2447 | + | ||||
| 190486.XAC3934 | + | ||||
| 190486.XAC3936 | (PF00665) | ||||
| 190486.XAC1391 | + | ||||
| 190486.XAC3979 | + | ||||
| 190486.XAC4100 | + | ||||
| 190486.XAC2867 | + | ||||
| 190486.XAC3590 | + | ||||
| 190486.XAC3020 | + | ||||
| 190486.XAC0004 | + | ||||
| 190486.XAC0478 | (<) | ||||
| 190486.XAC3447 | + | ||||
| 190486.XAC4322 | (PF01527) | ||||
| 190486.XAC1481 | + | ||||
| 190486.XAC3017 | + | ||||
| 190486.XAC2885 | + | ||||
| 190486.XAC2880 | + | ||||
| 190486.XAC2213 | (+) | (>) | |||
| 190486.XAC2577 | + | ||||
| 190486.XAC1340 | + | ||||
| 190486.XAC3674 | + | ||||
| 190486.XAC3420 | + | ||||
| 190486.XAC0346 | + | ||||
| 190486.XAC0345 | + | ||||
| 190486.XAC0343 | (PF01527) | ||||
| 190486.XAC0650 | (+) | (plastid) | |||
| 190486.XAC2502 | + | ||||
| 190486.XAC2475 | + | ||||
| 190486.XAC2890 | (PF01527) | ||||
| 190486.XAC4070 | + | ||||
| 190486.XAC2238 | + | ||||
| 190486.XAC3323 | + | ||||
| 190486.XAC1359 | + | ||||
| 190486.XAC1825 | + | ||||
| 190486.XAC4124 | + | ||||
| 190486.XAC0483 | + | ||||
| 190486.XAC0466 | + | ||||
| 190486.XAC0464 | + | ||||
| 190486.XAC4132 | (PF00328) | ||||
| 190486.XAC4133 | (PF01419) | ||||
| 190486.XAC4207 | (PF01527) | ||||
| 190486.XAC1753 | + | ||||
| 190486.XAC0668 | (+) | (plastid) | |||
| 190486.XAC4302 | + | ||||
| 190486.XAC3461 | + | ||||
| 190486.XAC2224 | (PF01527) | ||||
| 190486.XAC1681 | + | ||||
| 190486.XAC2316 | + | ||||
| 190486.XAC2132 | (PF01527) | ||||
| 190486.XAC1320 | + | ||||
| 190486.XAC1032 | (<) | ||||
| 190486.XAC0012 | (+) | (mitochondrial) | |||
| 190486.XAC4159 | + | ||||
| 190486.XAC0152 | (PF01527) | ||||
| 190486.XAC0257 | + | ||||
| 190486.XAC0253 | + | ||||
| 190486.XAC0258 | (>) | ||||
| 190486.XAC3079 | (+) | (plastid) | |||
| 190486.XAC2781 | + | ||||
| 190486.XAC2786 | + | ||||
| 190486.XAC0674 | + | ||||
| 190486.XAC2237 | + | ||||
| 190486.XAC3321 | (PF01527) | ||||
| 190486.XAC0929 | (+) | (plastid) | |||
| 190486.XAC3325 | + | ||||
| 190486.XAC0812 | (PF00328) | ||||
| 190486.XAC1783 | + | ||||
| 190486.XAC0190 | + | ||||
| 190486.XAC3579 | + | ||||
| 190486.XAC3474 | + | ||||
| 190486.XAC0363 | (+) | (ER) | |||
| 190486.XAC0907 | + | ||||
| 190486.XAC1804 | + | ||||
| 190486.XAC0260 | + | ||||
| 190486.XAC3797 | + | ||||
| 190486.XAC3086 | + | ||||
| 190486.XAC2426 | (PF01527) | ||||
| 190486.XAC3404 | + | ||||
| 190486.XAC2688 | (<) | ||||
| 190486.XAC3247 | (PF01527) | ||||
| 190486.XAC1795 | + | ||||
| 190486.XAC1791 | + | ||||
| 190486.XAC1385 | + | ||||
| 190486.XAC0601 | + | ||||
| 190486.XAC1305 | (PF16158) | ||||
| 190486.XAC1301 | + | ||||
| 190486.XAC0303 | + | ||||
| 190486.XAC1872 | + | ||||
| 190486.XAC1870 | + | ||||
| 190486.XAC1877 | + | ||||
| 190486.XAC0277 | (+) | (ER) | |||
| 190486.XAC3036 | (+) | (plastid) | |||
| 190486.XAC2926 | + | ||||
| 190486.XAC2922 | + | ||||
| 190486.XAC2929 | + | ||||
| 190486.XAC4194 | (+) | (plastid) | |||
| 190486.XAC2699 | + | ||||
| 190486.XAC2102 | (PF01527) | ||||
| 190486.XAC2100 | (PF01527) | ||||
| 190486.XAC2219 | + | ||||
| 190486.XAC2212 | + | ||||
| 190486.XAC1865 | + | ||||
| 190486.XAC0207 | + | ||||
| 190486.XAC0205 | (>) | ||||
| 190486.XAC2437 | + | ||||
| 190486.XAC1910 | + | ||||
| 190486.XAC1983 | + | ||||
| 190486.XAC0518 | + | ||||
| 190486.XAC4188 | (>) | ||||
| 190486.XAC2469 | + | ||||
| 190486.XAC1643 | + | ||||
| 190486.XAC2175 | (PF01527) | ||||
| 190486.XAC2375 | + | ||||
| 190486.XAC2770 | + | ||||
| 190486.XAC2777 | + | ||||
| 190486.XAC4320 | + | ||||
| 190486.XAC1262 | (+) | (PF07720) | |||
| 190486.XAC0163 | (+) | (ER) | |||
| 190486.XAC2005 | + | ||||
| 190486.XAC1070 | (PF01527) | ||||
| 190486.XAC1635 | (+) | (mitochondrial) | |||
| 190486.XAC1102 | (PF01527) | ||||
| 190486.XAC3738 | + | ||||
| 190486.XAC2614 | + | ||||
| 190486.XAC1921 | (PF01527) | ||||
| 190486.XAC0198 | + | ||||
| 190486.XAC2904 | + | ||||
| 190486.XAC3744 | (+) | (ER) | |||
| 190486.XAC3745 | (+) | + | |||
| 190486.XAC3748 | + | ||||
| 190486.XAC1671 | + | ||||
| 190486.XAC2343 | + | ||||
| 190486.XAC1451 | (+) | (ER) | |||
| 190486.XAC3536 | (+) | plastid | |||
| 190486.XAC1705 | + | ||||
| 190486.XAC3623 | + | ||||
| 190486.XAC3532 | + | ||||
| 190486.XAC1933 | + | ||||
| 190486.XAC0716 | + | ||||
| 190486.XAC1669 | + | ||||
| 190486.XAC1660 | (PF01527) | ||||
| 190486.XAC1987 | (>) | ||||
| 190486.XAC2372 | (PF01527) | ||||
| 190486.XAC3283 | (PF01527) | ||||
| 190486.XAC4256 | + | ||||
| 190486.XAC3377 | + | ||||
| 190486.XAC0463 | (+) | plastid | |||
| 190486.XAC1283 | + | ||||
| 190486.XAC1446 | + | ||||
| 190486.XAC1445 | + | ||||
| 190486.XAC2154 | + | ||||
| 190486.XAC1053 | (PF01527) | ||||
| 190486.XAC1058 | + | ||||
| 190486.XAC3040 | + | ||||
| 190486.XAC3523 | (+) | + | |||
| 190486.XAC3262 | + | ||||
| 190486.XAC0793 | + | ||||
| 190486.XAC0416 | + | ||||
| 190486.XAC0142 | + | ||||
| 190486.XAC1949 | + | ||||
| 190486.XAC1618 | (>) | ||||
| 190486.XAC4081 | + | ||||
| 190486.XAC0090 | (PF01527) | ||||
| 190486.XAC2967 | (+) | (plastid) | |||
| 190486.XAC3760 | (+) | plastid | |||
| 190486.XAC3764 | (PF01527) | ||||
| 190486.XAC3148 | + | ||||
| 190486.XAC3455 | + | ||||
| 190486.XAC1613 | (PF00161) | ||||
| 190486.XAC3146 | + | ||||
| 190486.XAC4264 | + | ||||
| 190486.XAC4060 | + | ||||
| 190486.XAC2633 | (PF01527) | ||||
| 190486.XAC1544 | + | ||||
| 190486.XAC1307 | (+) | + | |||
| 190486.XAC1040 | + | ||||
| 190486.XAC0683 | (+) | (plastid) | |||
| 190486.XAC3316 | + | ||||
| 190486.XAC2373 | (+) | + | |||
| 190486.XAC1195 | (<) | ||||
| 190486.XAC1135 | (>) | ||||
| 190486.XAC0089 | (+) | (<) | |||
| 190486.XAC3814 | + | ||||
| 190486.XAC2959 | + | ||||
| 190486.XAC2701 | (>) | ||||
| 190486.XAC3777 | + | not used | |||
| 190486.XAC0174 | + | ||||
| 190486.XAC3559 | + | ||||
| 190486.XAC2827 | PF17067 | ||||
| 190486.XAC4270 | + | ||||
| 190486.XAC4075 | + | ||||
| 190486.XAC4072 | + | ||||
| 190486.XAC2736 | + | ||||
| 190486.XAC2038 | + | ||||
| 190486.XAC0959 | + | ||||
| 190486.XAC1422 | (+) | (plastid) | |||
| 190486.XAC2601 | + | ||||
| 190486.XAC2603 | (PF01527) | ||||
| 190486.XAC1147 | (PF16387) | ||||
| 190486.XAC2236 | + | ||||
| 190486.XAC0549 | + | ||||
| 190486.XAC3944 | (PF01527) | ||||
| 190486.XAC0167 | (+) | + | |||
| 190486.XAC1969 | (+) | (mitochondrial) | |||
| 190486.XAC3016 | + | ||||
| 190486.XAC3014 | + | ||||
| 190486.XAC3015 | + | ||||
| 190486.XAC3011 | + | ||||
| 190486.XAC0618 | + | ||||
| 190486.XAC0942 | + | ||||
| 190486.XAC2613 | + | ||||
| 190486.XAC2619 | + | ||||
| 190486.XAC3637 | (>) | ||||
| 190486.XAC1564 | + | ||||
| 190486.XAC3564 | + | ||||
| 190486.XAC3836 | (+) | (plastid) | |||
| 190486.XAC3956 | (PF08212) | ||||
| 190486.XAC0579 | (PF01527) | ||||
| 190486.XAC0595 | (+) | ||||
| 190486.XAC1973 | (+) | ||||
| 190486.XAC1976 | (+) | ||||
| 190486.XAC2846 | (+) | ||||
| 190486.XAC4297 | (+) | ||||
| 190486.XAC2533 | (+) | ||||
| 190486.XAC2530 | (+) | ||||
| 190486.XAC3005 | (+) | ||||
| 190486.XAC2281 | (+) | ||||
| 190486.XAC2445 | (+) | ||||
| 190486.XAC1406 | (+) | ||||
| 190486.XAC1138 | (+) | ||||
| 190486.XAC1574 | (+) | ||||
| 190486.XAC1570 | (+) | ||||
| 190486.XAC2062 | (+) | ||||
| 190486.XAC0603 | (+) | ||||
| 190486.XAC0295 | (+) | ||||
| 190486.XAC3924 | (+) | ||||
| 190486.XAC0564 | (+) | ||||
| 190486.XAC1186 | (+) | ||||
| 190486.XAC1187 | (+) | ||||
| 190486.XAC2434 | (+) | ||||
| 190486.XAC0637 | (+) | ||||
| 190486.XAC4333 | (+) | ||||
| 190486.XAC2186 | (+) | ||||
| 190486.XAC2180 | (+) | ||||
| 190486.XAC2679 | (+) | ||||
| 190486.XAC1650 | (+) | ||||
| 190486.XAC1219 | (+) | ||||
| 190486.XAC1171 | (+) | ||||
| 190486.XAC1176 | (+) | ||||
| 190486.XAC1372 | (+) | ||||
| 190486.XAC2468 | (+) | ||||
| 190486.XAC3939 | (+) | not used | |||
| 190486.XAC0354 | (+) | ||||
| 190486.XAC0879 | (+) | ||||
| 190486.XAC3734 | (+) | ||||
| 190486.XAC0134 | (+) | ||||
| 190486.XAC0131 | (+) | ||||
| 190486.XAC0642 | (+) | ||||
| 190486.XAC3025 | (+) | ||||
| 190486.XAC2243 | (+) | ||||
| 190486.XAC3551 | (+) | ||||
| 190486.XAC2887 | (+) | ||||
| 190486.XAC0827 | (+) | ||||
| 190486.XAC2089 | (+) | ||||
| 190486.XAC2211 | (+) | ||||
| 190486.XAC3909 | (+) | ||||
| 190486.XAC0341 | (+) | ||||
| 190486.XAC1838 | (+) | ||||
| 190486.XAC0127 | (+) | ||||
| 190486.XAC2875 | (+) | ||||
| 190486.XAC2879 | (+) | ||||
| 190486.XAC3052 | (+) | ||||
| 190486.XAC0017 | (+) | ||||
| 190486.XAC0015 | (+) | ||||
| 190486.XAC4316 | (+) | ||||
| 190486.XAC2650 | (+) | ||||
| 190486.XAC0927 | (+) | ||||
| 190486.XAC3969 | (+) | ||||
| 190486.XAC3910 | (+) | ||||
| 190486.XAC3917 | (+) | ||||
| 190486.XAC0331 | (+) | ||||
| 190486.XAC0336 | (+) | ||||
| 190486.XAC1820 | (+) | ||||
| 190486.XAC4125 | (+) | ||||
| 190486.XAC4122 | (+) | ||||
| 190486.XAC4121 | (+) | ||||
| 190486.XAC0246 | (+) | ||||
| 190486.XAC0249 | (+) | ||||
| 190486.XAC0469 | (+) | ||||
| 190486.XAC3685 | (+) | ||||
| 190486.XAC2790 | (+) | ||||
| 190486.XAC2400 | (+) | ||||
| 190486.XAC1590 | (+) | ||||
| 190486.XAC0419 | (+) | ||||
| 190486.XAC1322 | (+) | ||||
| 190486.XAC1326 | (+) | ||||
| 190486.XAC3570 | (+) | ||||
| 190486.XAC4346 | (+) | ||||
| 190486.XAC3754 | (+) | ||||
| 190486.XAC0323 | (+) | ||||
| 190486.XAC1550 | (+) | ||||
| 190486.XAC3452 | (+) | ||||
| 190486.XAC1813 | (+) | ||||
| 190486.XAC4151 | (+) | ||||
| 190486.XAC4154 | (+) | ||||
| 190486.XAC0499 | (+) | ||||
| 190486.XAC3783 | (+) | not used | |||
| 190486.XAC0471 | (+) | ||||
| 190486.XAC0785 | (+) | ||||
| 190486.XAC0076 | (+) | ||||
| 190486.XAC2785 | (+) | ||||
| 190486.XAC0600 | (+) | ||||
| 190486.XAC2731 | (+) | ||||
| 190486.XAC2306 | (+) | ||||
| 190486.XAC3259 | (+) | ||||
| 190486.XAC0813 | (+) | ||||
| 190486.XAC2377 | (+) | ||||
| 190486.XAC1781 | (+) | ||||
| 190486.XAC1331 | (+) | ||||
| 190486.XAC4315 | (+) | ||||
| 190486.XAC0903 | (+) | ||||
| 190486.XAC1801 | (+) | ||||
| 190486.XAC1919 | (+) | ||||
| 190486.XAC0042 | (+) | ||||
| 190486.XAC3087 | (+) | ||||
| 190486.XAC4115 | (+) | ||||
| 190486.XAC2335 | (+) | ||||
| 190486.XAC3884 | (+) | ||||
| 190486.XAC3888 | (+) | ||||
| 190486.XAC1019 | (+) | ||||
| 190486.XAC2839 | (+) | ||||
| 190486.XAC1879 | (+) | ||||
| 190486.XAC4171 | (+) | ||||
| 190486.XAC2919 | (+) | ||||
| 190486.XAC3439 | (+) | ||||
| 190486.XAC0692 | (+) | ||||
| 190486.XAC1498 | (+) | ||||
| 190486.XAC1657 | (+) | ||||
| 190486.XAC2698 | (+) | ||||
| 190486.XAC4220 | (+) | ||||
| 190486.XAC3507 | (+) | ||||
| 190486.XAC0874 | (+) | ||||
| 190486.XAC3291 | (+) | ||||
| 190486.XAC1273 | (+) | ||||
| 190486.XAC2366 | (+) | ||||
| 190486.XAC2290 | (+) | ||||
| 190486.XAC3519 | (+) | ||||
| 190486.XAC1000 | (+) | ||||
| 190486.XAC3970 | (+) | ||||
| 190486.XAC4166 | (+) | ||||
| 190486.XAC4213 | (+) | ||||
| 190486.XAC0519 | (+) | ||||
| 190486.XAC0731 | (+) | ||||
| 190486.XAC3792 | (+) | ||||
| 190486.XAC4186 | (+) | ||||
| 190486.XAC1645 | (+) | ||||
| 190486.XAC1640 | (+) | ||||
| 190486.XAC1649 | (+) | ||||
| 190486.XAC2594 | (+) | ||||
| 190486.XAC0846 | (+) | ||||
| 190486.XAC2779 | (+) | ||||
| 190486.XAC2006 | (+) | ||||
| 190486.XAC1260 | (+) | ||||
| 190486.XAC1460 | (+) | ||||
| 190486.XAC3506 | (+) | not used | |||
| 190486.XAC0189 | (+) | ||||
| 190486.XAC3981 | (+) | ||||
| 190486.XAC0728 | (+) | ||||
| 190486.XAC3180 | (+) | ||||
| 190486.XAC0968 | (+) | ||||
| 190486.XAC3403 | (+) | ||||
| 190486.XAC2165 | (+) | ||||
| 190486.XAC0854 | (+) | ||||
| 190486.XAC1584 | (+) | ||||
| 190486.XAC2764 | (+) | ||||
| 190486.XAC0766 | (+) | ||||
| 190486.XAC2580 | (+) | ||||
| 190486.XAC1110 | (+) | ||||
| 190486.XAC3628 | (+) | ||||
| 190486.XAC3996 | (+) | ||||
| 190486.XAC3994 | (+) | ||||
| 190486.XAC4211 | (+) | ||||
| 190486.XAC0150 | (+) | ||||
| 190486.XAC2481 | (+) | ||||
| 190486.XAC2391 | (+) | ||||
| 190486.XAC2715 | (+) | ||||
| 190486.XAC2022 | (+) | ||||
| 190486.XAC3526 | (+) | ||||
| 190486.XAC2153 | (+) | ||||
| 190486.XAC4240 | (+) | ||||
| 190486.XAC0062 | (+) | ||||
| 190486.XAC3616 | (+) | ||||
| 190486.XAC3965 | (+) | ||||
| 190486.XAC1616 | (+) | ||||
| 190486.XAC4263 | (+) | ||||
| 190486.XAC2567 | (+) | ||||
| 190486.XAC4065 | (+) | ||||
| 190486.XAC0912 | (+) | ||||
| 190486.XAC2381 | (+) | ||||
| 190486.XAC2036 | (+) | ||||
| 190486.XAC0913 | (+) | ||||
| 190486.XAC0891 | (+) | ||||
| 190486.XAC3468 | (+) | ||||
| 190486.XAC1047 | (+) | ||||
| 190486.XAC1044 | (+) | ||||
| 190486.XAC1408 | (+) | ||||
| 190486.XAC1136 | (+) | ||||
| 190486.XAC3816 | (+) | ||||
| 190486.XAC0397 | (+) | ||||
| 190486.XAC2958 | (+) | ||||
| 190486.XAC2537 | (+) | ||||
| 190486.XAC2709 | (+) | ||||
| 190486.XAC2557 | (+) | ||||
| 190486.XAC4074 | (+) | ||||
| 190486.XAC1731 | (+) | ||||
| 190486.XAC2042 | (+) | ||||
| 190486.XAC2047 | (+) | ||||
| 190486.XAC0803 | (+) | ||||
| 190486.XAC1149 | (+) | ||||
| 190486.XAC2638 | (+) | ||||
| 190486.XAC2637 | (+) | ||||
| 190486.XAC3945 | (+) | ||||
| 190486.XAC1892 | (+) | ||||
| 190486.XAC3493 | (+) | ||||
| 190486.XAC0161 | (+) | ||||
| 190486.XAC1966 | (+) | ||||
| 190486.XAC2544 | (+) | ||||
| 190486.XAC2542 | (+) | ||||
| 190486.XAC3235 | (+) | ||||
| 190486.XAC1418 | (+) | ||||
| 190486.XAC1410 | (+) | ||||
| 190486.XAC1569 | (+) | ||||
| 190486.XAC4252 | (+) | ||||
| 190486.XAC3378 | (+) | ||||
| 190486.XAC3445 | (+) | ||||
| 190486.XAC1153 | (+) | ||||
| 190486.XAC1155 | (+) | ||||
| 190486.XAC1397 | (+) | ||||
| 190486.XAC0610 | (+) | ||||
| 190486.XAC0744 | (+) | ||||
| 190486.XAC3839 | (+) | ||||
| 190486.XAC2496 | (+) | ||||
| 190486.XAC0855 | (+) | ||||
| 190486.XAC0280 | (+) | ||||
| 190486.XAC0576 | (+) | ||||
| 190486.XAC1886 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 1.1 (11/10 KEGG proteins)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.6 (6/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.625 (13/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.1 (11/10 KEGG proteins)
Estimated copy number = 0.6 (6/10 KEGG proteins)
Estimated copy number = 1.625 (13/8 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
