Effective results for Prochlorococcus marinus str. MIT 9301 (eggnog40)

Summary

Number of putative secreted proteins: 105
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 89 eukaryotic-like domains, contained in 105 proteins (6 high, 99 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
167546.P9301_04861(PF16639) (PF01333)(mitochondrial); (ER)
167546.P9301_15431(PF02544)(ER)
167546.P9301_12051(PF01789)ER
167546.P9301_18341(PF01737)ER
167546.P9301_17741(PF12046)ER
167546.P9301_08561(PF12452)ER
167546.P9301_03401(PF00421)(mitochondrial)
167546.P9301_04941(PF02507)ER
167546.P9301_14461(PF12600)ER
167546.P9301_09951(PF11152)ER
167546.P9301_03121PF00493(ER)
167546.P9301_05971(PF11460)ER
167546.P9301_05961(PF10716)ER
167546.P9301_05341(PF13326)mitochondrial
167546.P9301_07481(PF00504)ER
167546.P9301_05271(PF11016)ER
167546.P9301_02501(PF01716)(mitochondrial); (plastid)
167546.P9301_01281(PF05421)(ER); (plastid)
167546.P9301_06801(PF16166)ER
167546.P9301_16631(PF11341)(ER)
167546.P9301_03221(PF00283)(ER); not used
167546.P9301_03421(PF05151)ER; not used
167546.P9301_03211(PF00284) (PF00283)
167546.P9301_02741(PF00737)(mitochondrial)
167546.P9301_02761(PF02468)ER; not used
167546.P9301_04931(PF01701)ER; not used
167546.P9301_02541(PF04483)(mitochondrial)
167546.P9301_02771(PF02532)ER; not used
167546.P9301_12241(PF06298)ER; not used
167546.P9301_15111(PF11317)(ER)
167546.P9301_04881(PF11267)
167546.P9301_17151(PF00223)
167546.P9301_17971(PF11623)
167546.P9301_07511(PF09493)
167546.P9301_01641(PF10664)
167546.P9301_07171(PF11833)
167546.P9301_11641(PF02529)not used
167546.P9301_03241(PF01788)
167546.P9301_13481(PF02392)
167546.P9301_17161(PF00223)
167546.P9301_03641(PF01786)
167546.P9301_06581(PF13455)
167546.P9301_01651(PF11371)
167546.P9301_11181(PF04755)
167546.P9301_10161(PF04483)
167546.P9301_16751(PF04983)
167546.P9301_01241(PF12095)
167546.P9301_00751(PF00504)
167546.P9301_13661(PF08854)
167546.P9301_10481(PF06799)
167546.P9301_13441(PF08041)not used
167546.P9301_16741(PF04983)
167546.P9301_09641(PF11360)
167546.P9301_03231PF02419not used
167546.P9301_13721(PF00421)
167546.P9301_17111(PF02605)
167546.P9301_09271(PF11282)
167546.P9301_08511(PF12527)
167546.P9301_17121(PF00796)not used
167546.P9301_06541(PF00421)
167546.P9301_17501(PF11909)
167546.P9301_08011(PF11264)
167546.P9301_14721(PF13355)
167546.P9301_16861(PF11998)
167546.P9301_07201(PF12049)
167546.P9301_11001(PF04760)not used
167546.P9301_08001PF03742not used
167546.P9301_08071(PF05996)
167546.P9301_07861(PF04760)
167546.P9301_13501(PF00421)
167546.P9301_16371(PF11805)
167546.P9301_17511(PF12617)
167546.P9301_04101(PF08853)
167546.P9301_03391(PF01405)not used
167546.P9301_17851(PF05996)
167546.P9301_13201(PF00504)not used
167546.P9301_09731(PF09353)
167546.P9301_16851(PF04760)
167546.P9301_12131(PF10674)
167546.P9301_09551(PF10693)
167546.P9301_17691(PF02531)
167546.P9301_03561(PF02427)
167546.P9301_15031(PF00504)
167546.P9301_02951(PF02533)not used
167546.P9301_18661(PF01947)
167546.P9301_18401(PF04481)
167546.P9301_13741(PF13911)
167546.P9301_17841(PF05996)
167546.P9301_06511(PF09493)
167546.P9301_09541(PF12159)
167546.P9301_06461(PF07082)
167546.P9301_00731(PF06596)
167546.P9301_08041(PF11347)
167546.P9301_12931PF10999
167546.P9301_01381(PF11910)
167546.P9301_17541PF10999
167546.P9301_16301(PF04839)
167546.P9301_15161(PF08855)
167546.P9301_11091(PF04755)
167546.P9301_02831(PF11378)
167546.P9301_10231(PF11210)
167546.P9301_09141(PF11947)
167546.P9301_03531(PF12899)
167546.P9301_06481(PF01744)
167546.P9301_12861PF10999

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================