Effective results for Prochlorococcus marinus str. MIT 9515 (eggnog40)

Summary

Number of putative secreted proteins: 106
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 87 eukaryotic-like domains, contained in 106 proteins (8 high, 98 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
167542.P9515_05251				(PF16639) (PF01333)	ER
167542.P9515_09091				(PF08491)	(ER)
167542.P9515_17701				(PF12046)	(ER)
167542.P9515_05641				(PF11016)	ER
167542.P9515_19021				(PF00862)	(ER); ER
167542.P9515_03471				(PF00421)	(mitochondrial)
167542.P9515_15931				PF02468	ER
167542.P9515_05331				(PF02507)	ER
167542.P9515_08871				(PF00504)	ER
167542.P9515_09461				(PF11152)	ER
167542.P9515_07861				(PF12452)	ER
167542.P9515_11891				(PF01789)	mitochondrial
167542.P9515_17791				(PF05996)	(mitochondrial)
167542.P9515_04011				(PF11196)	ER
167542.P9515_05711				(PF13326)	ER
167542.P9515_12531				PF02077	ER
167542.P9515_06361				(PF11460)	ER
167542.P9515_18341				(PF01737)	ER
167542.P9515_04521				(PF08853)	(mitochondrial)
167542.P9515_02601				(PF01716)	ER
167542.P9515_06351				(PF10716)	ER
167542.P9515_01251				(PF05421)	(ER)
167542.P9515_02871				(PF12600)	(mitochondrial)
167542.P9515_03301				(PF00284) (PF00283)
167542.P9515_05321				(PF01701)	ER; not used
167542.P9515_03311				(PF00283)	(ER); not used
167542.P9515_03491				(PF05151)	ER; not used
167542.P9515_02861				(PF02532)	ER; not used
167542.P9515_16261				(PF11805)	(ER)
167542.P9515_17411				(PF11909)	(mitochondrial)
167542.P9515_02841				(PF00737)	(mitochondrial)
167542.P9515_02851				PF02468	ER; not used
167542.P9515_06901				(PF09493)	(ER)
167542.P9515_08401				(PF11347)	(ER)
167542.P9515_03051				(PF02533)	not used
167542.P9515_17031				(PF00223)
167542.P9515_02931				(PF11378)
167542.P9515_09771				(PF11360)
167542.P9515_01351				(PF11910)
167542.P9515_17021				(PF00223)
167542.P9515_18401				(PF04481)
167542.P9515_05271				(PF11267)
167542.P9515_03211				PF00493
167542.P9515_08431				(PF11264)
167542.P9515_03321				PF02419	not used
167542.P9515_17421				(PF12617)
167542.P9515_06871				(PF01744)
167542.P9515_09881				(PF12159)	not used
167542.P9515_08841				(PF09493)
167542.P9515_03331				(PF01788)
167542.P9515_07221				PF10999
167542.P9515_12921				(PF00504)
167542.P9515_11101				(PF04755)
167542.P9515_15761				PF10999
167542.P9515_12751				(PF00283)
167542.P9515_13191				(PF08041)	not used
167542.P9515_13371				(PF08854)
167542.P9515_06851				(PF07082)
167542.P9515_01211				(PF12095)
167542.P9515_10271				(PF11947)
167542.P9515_18661				(PF01947)
167542.P9515_09291				(PF04483)
167542.P9515_03611				(PF02427)
167542.P9515_03591				(PF12899)
167542.P9515_17461				(PF00504)	not used
167542.P9515_09861				(PF10693)
167542.P9515_11481				(PF02529)	not used
167542.P9515_07911				(PF12527)
167542.P9515_02641				(PF04483)
167542.P9515_13231				(PF02392)
167542.P9515_14781				(PF00504)
167542.P9515_10141				(PF11282)
167542.P9515_17651				(PF02531)
167542.P9515_17921				(PF11623)
167542.P9515_13441				(PF13911)
167542.P9515_00711				(PF06596)
167542.P9515_16641				(PF04983)
167542.P9515_11971				(PF10674)
167542.P9515_12081				(PF06298)	not used
167542.P9515_16631				(PF04983)
167542.P9515_14481				(PF13355)
167542.P9515_01731				(PF10664)
167542.P9515_00731				(PF00504)
167542.P9515_11361				(PF11196)
167542.P9515_07371				(PF11833)
167542.P9515_16531				(PF11341)
167542.P9515_16751				(PF11998)
167542.P9515_13421				(PF00421)
167542.P9515_17801				(PF05996)
167542.P9515_09211				(PF11210)
167542.P9515_01741				(PF11371)
167542.P9515_17501				PF10999
167542.P9515_07181				(PF16166)
167542.P9515_12331				(PF04755)
167542.P9515_14861				(PF11317)
167542.P9515_14911				(PF08855)
167542.P9515_09681				(PF09353)
167542.P9515_08371				(PF05996)
167542.P9515_08971				(PF06799)
167542.P9515_07401				(PF12049)
167542.P9515_16191				(PF04839)
167542.P9515_16991				(PF02605)
167542.P9515_13251				(PF00421)
167542.P9515_06931				(PF00421)
167542.P9515_04081				(PF03492)
167542.P9515_08891				(PF00504)	not used

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================