Metamenu

Effective results for Synechococcus sp. CC9605 (eggnog40)

Summary

Number of putative secreted proteins: 139
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 108 eukaryotic-like domains, contained in 139 proteins (6 high, 133 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
110662.Syncc9605_0627(PF16639) (PF01333)mitochondrial; (plastid)
110662.Syncc9605_2383(PF13481)(mitochondrial)
110662.Syncc9605_0285(PF07444)ER
110662.Syncc9605_0737(PF08847)(ER)
110662.Syncc9605_2396(PF10664)mitochondrial
110662.Syncc9605_1332(PF11152)ER
110662.Syncc9605_0634(PF02507)ER
110662.Syncc9605_1316(PF01169)ER
110662.Syncc9605_0771(PF13301)ER
110662.Syncc9605_0989(PF11460)ER
110662.Syncc9605_0988(PF10716)ER
110662.Syncc9605_1320(PF04483)mitochondrial
110662.Syncc9605_0405(PF12046)ER
110662.Syncc9605_1315(PF01169)ER
110662.Syncc9605_0692(PF13326)mitochondrial
110662.Syncc9605_1874(PF12452)ER
110662.Syncc9605_2097(PF11317)ER
110662.Syncc9605_0333(PF12204)ER
110662.Syncc9605_1687(PF06298)ER
110662.Syncc9605_2262(PF07444)ER
110662.Syncc9605_0793(PF13301)ER
110662.Syncc9605_1441(PF11264)(ER)
110662.Syncc9605_1991(PF02392)(ER)
110662.Syncc9605_2334(PF06514)ER
110662.Syncc9605_0819(PF17124)ER
110662.Syncc9605_0075(PF04481)(mitochondrial)
110662.Syncc9605_1427(PF12159)ER
110662.Syncc9605_1426(PF10693)ER
110662.Syncc9605_0294(PF04483)mitochondrial; (mitochondrial)
110662.Syncc9605_0299(PF01716)ER
110662.Syncc9605_1640(PF01789)ER
110662.Syncc9605_0262(PF02468)ER; not used
110662.Syncc9605_2547(PF01947)(ER)
110662.Syncc9605_0629(PF11267)(plastid)
110662.Syncc9605_2040(PF09366)(mitochondrial)
110662.Syncc9605_0419(PF06206)(mitochondrial)
110662.Syncc9605_1927(PF13759)(ER)
110662.Syncc9605_2676(PF16166)(mitochondrial)
110662.Syncc9605_0200(PF00284) (PF00283)
110662.Syncc9605_0685(PF11016)(ER)
110662.Syncc9605_2261(PF06596)ER; not used
110662.Syncc9605_0237(PF02533)ER; not used
110662.Syncc9605_1213(PF11347)(plastid)
110662.Syncc9605_0642PF00018(ER)
110662.Syncc9605_1998(PF01169)plastid
110662.Syncc9605_0493(PF02427)(mitochondrial)
110662.Syncc9605_1943(PF14159)
110662.Syncc9605_2362(PF11910)
110662.Syncc9605_0337a(PF00796)not used
110662.Syncc9605_0260(PF02532)not used
110662.Syncc9605_0263(PF00737)
110662.Syncc9605_0131(PF11623)not used
110662.Syncc9605_1159(PF11947)
110662.Syncc9605_1394(PF11360)
110662.Syncc9605_2173(PF04839)
110662.Syncc9605_2375(PF00124)
110662.Syncc9605_2397(PF11371)
110662.Syncc9605_0633(PF01701)not used
110662.Syncc9605_2183(PF11805)
110662.Syncc9605_1140(PF07082)
110662.Syncc9605_1987PF02005
110662.Syncc9605_0440(PF06206)
110662.Syncc9605_0469a(PF01405)not used
110662.Syncc9605_1770(PF13759)
110662.Syncc9605_1777(PF01744)
110662.Syncc9605_1284(PF12049)
110662.Syncc9605_1827(PF11397)
110662.Syncc9605_0388(PF14159)
110662.Syncc9605_0383(PF10999)
110662.Syncc9605_1281(PF11833)
110662.Syncc9605_1900(PF13911)
110662.Syncc9605_2053(PF11341)
110662.Syncc9605_0881(PF13355)
110662.Syncc9605_0422(PF05996)
110662.Syncc9605_0423(PF05996)
110662.Syncc9605_0770PF04777
110662.Syncc9605_0399(PF02531)
110662.Syncc9605_0377(PF11909)
110662.Syncc9605_0378(PF12617)
110662.Syncc9605_2139(PF13481)
110662.Syncc9605_1947a(PF02529)not used
110662.Syncc9605_1329(PF03040)
110662.Syncc9605_1741(PF01697)
110662.Syncc9605_1033(PF08854)
110662.Syncc9605_1816(PF06799)
110662.Syncc9605_1756(PF00504)
110662.Syncc9605_0978PF00996
110662.Syncc9605_0198PF02419not used
110662.Syncc9605_0199(PF00283)not used
110662.Syncc9605_0197(PF01788)
110662.Syncc9605_1311(PF11210)
110662.Syncc9605_1869(PF12527)
110662.Syncc9605_2065(PF04983)
110662.Syncc9605_2066(PF04983)
110662.Syncc9605_1986a(PF08041)not used
110662.Syncc9605_2103(PF08855)
110662.Syncc9605_1781(PF08417)
110662.Syncc9605_1656(PF10674)
110662.Syncc9605_2650(PF12204)
110662.Syncc9605_0513(PF02672)
110662.Syncc9605_0515(PF10063)
110662.Syncc9605_0519(PF00124)
110662.Syncc9605_0332(PF00223)
110662.Syncc9605_0331(PF00223)
110662.Syncc9605_0337(PF02605)
110662.Syncc9605_2323(PF00504)not used
110662.Syncc9605_2265(PF00504)
110662.Syncc9605_2029a(PF08853)
110662.Syncc9605_0307(PF00124)
110662.Syncc9605_0785(PF00940)
110662.Syncc9605_1477(PF00504)
110662.Syncc9605_1216(PF05996)
110662.Syncc9605_1695(PF13481)
110662.Syncc9605_0828(PF17124)
110662.Syncc9605_1417(PF13481)
110662.Syncc9605_0315(PF09366)
110662.Syncc9605_0226(PF03492)
110662.Syncc9605_1443PF03742not used
110662.Syncc9605_1042(PF00124)
110662.Syncc9605_1992(PF00124)
110662.Syncc9605_2245(PF13481)
110662.Syncc9605_0817(PF13759)
110662.Syncc9605_0251(PF11378)
110662.Syncc9605_0259(PF12600)
110662.Syncc9605_1369(PF09353)
110662.Syncc9605_0076(PF01737)
110662.Syncc9605_1189(PF11282)
110662.Syncc9605_1057(PF02672)
110662.Syncc9605_2186(PF13759)
110662.Syncc9605_2346(PF12095)
110662.Syncc9605_2349(PF05421)
110662.Syncc9605_0487(PF12899)
110662.Syncc9605_0244(PF13301)
110662.Syncc9605_0245(PF09366)
110662.Syncc9605_2283(PF02943)
110662.Syncc9605_0472(PF05151)not used
110662.Syncc9605_1439(PF10013)not used
110662.Syncc9605_2162(PF02941)
110662.Syncc9605_2568(PF00504)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================