Effective results for Streptococcus infantarius subsp. infantarius CJ18 (eggnog40)

Summary

Number of putative secreted proteins: 119
- Predicted by T4SEpre: 97
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 45 proteins (1 high, 44 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1069533.Sinf_0434			+		(mitochondrial)
1069533.Sinf_0189			+	(PF13276) (PF00665)
1069533.Sinf_0404			+		mitochondrial
1069533.Sinf_0558			+		(mitochondrial)
1069533.Sinf_1963			+		(mitochondrial)
1069533.Sinf_1560			+		ER
1069533.Sinf_0757			+	(PF13276) (PF00665)
1069533.Sinf_1369				(PF05257)	ER
1069533.Sinf_1187				(PF05257)	ER
1069533.Sinf_0102			+		ER
1069533.Sinf_1175			+		(ER)
1069533.Sinf_0131			+	(PF13276) (PF00665)
1069533.Sinf_0019				(PF05257)	ER
1069533.Sinf_0337			+		ER
1069533.Sinf_0480			+	(PF13276) (PF00665)
1069533.Sinf_0245			+		ER
1069533.Sinf_1352				(PF13276) (PF00665)	(mitochondrial)
1069533.Sinf_0806				(PF13276) (PF00665)	(mitochondrial)
1069533.Sinf_1225			+		(mitochondrial)
1069533.Sinf_1786			+		(mitochondrial)
1069533.Sinf_0266			+		ER
1069533.Sinf_0444			+		mitochondrial; (mitochondrial)
1069533.Sinf_0442			+		ER
1069533.Sinf_1793			+		ER
1069533.Sinf_0304			+		ER
1069533.Sinf_1300			+		ER
1069533.Sinf_1318			+		(mitochondrial)
1069533.Sinf_1071			+		(ER)
1069533.Sinf_1073				(PF13276) (PF00665)
1069533.Sinf_0980				(PF13276) (PF00665)
1069533.Sinf_1296				(PF13936) (PF00665)
1069533.Sinf_1928				(PF13276) (PF00665)
1069533.Sinf_1961				(PF13276) (PF00665)
1069533.Sinf_1637				(PF13936) (PF00665)
1069533.Sinf_1635			+		(mitochondrial)
1069533.Sinf_1382				(PF13936) (PF00665)
1069533.Sinf_1604				(PF13936) (PF00665)
1069533.Sinf_1080				(PF13936) (PF00665)
1069533.Sinf_1776				(PF13276)	(mitochondrial)
1069533.Sinf_1204				(PF13936) (PF00665)
1069533.Sinf_0074				(PF13936) (PF00665)
1069533.Sinf_0318			+		(mitochondrial)
1069533.Sinf_0194				(PF13936) (PF00665)
1069533.Sinf_1926			+
1069533.Sinf_0723			+
1069533.Sinf_0727			+
1069533.Sinf_0984			+
1069533.Sinf_0188				(PF13518)
1069533.Sinf_1846				(PF05495)
1069533.Sinf_0711				PF02916
1069533.Sinf_1661			+
1069533.Sinf_1663			+
1069533.Sinf_1285				(PF01610)
1069533.Sinf_0889			+
1069533.Sinf_0234			+
1069533.Sinf_1947			+
1069533.Sinf_1056				(PF01610)
1069533.Sinf_1615			+
1069533.Sinf_1126			+
1069533.Sinf_0776			+
1069533.Sinf_0772			+
1069533.Sinf_1738				(PF00665)
1069533.Sinf_1554			+
1069533.Sinf_1897			+
1069533.Sinf_1964			+
1069533.Sinf_0769			+
1069533.Sinf_1880			+
1069533.Sinf_0287			+
1069533.Sinf_0758				(PF13518)
1069533.Sinf_1714			+
1069533.Sinf_0113			+
1069533.Sinf_0020				(PF01610)
1069533.Sinf_1367			+
1069533.Sinf_1165			+
1069533.Sinf_0649			+
1069533.Sinf_0641			+
1069533.Sinf_1773				(PF00665)
1069533.Sinf_1770				(PF13936)
1069533.Sinf_1694			+
1069533.Sinf_0130				(PF13518)
1069533.Sinf_1442			+
1069533.Sinf_0656			+
1069533.Sinf_1741				(PF01610)	not used
1069533.Sinf_1520				(PF01610)
1069533.Sinf_0834			+
1069533.Sinf_0017			+
1069533.Sinf_0481				(PF13518)
1069533.Sinf_0484			+
1069533.Sinf_0249				(PF00665)
1069533.Sinf_1680			+
1069533.Sinf_0934				(PF01610)
1069533.Sinf_0389			+
1069533.Sinf_0325			+
1069533.Sinf_0784			+
1069533.Sinf_0786			+
1069533.Sinf_0789				(PF12949)
1069533.Sinf_0472			+
1069533.Sinf_0477			+
1069533.Sinf_1328			+
1069533.Sinf_1789			+
1069533.Sinf_0071			+
1069533.Sinf_0310			+
1069533.Sinf_0262			+
1069533.Sinf_0449			+
1069533.Sinf_0689				(PF01610)
1069533.Sinf_0681			+
1069533.Sinf_1336			+
1069533.Sinf_1799				(PF05257)
1069533.Sinf_1240			+
1069533.Sinf_0047			+
1069533.Sinf_1047				(PF13936)
1069533.Sinf_1494			+
1069533.Sinf_1865				(PF13936)
1069533.Sinf_1863			+
1069533.Sinf_1645				(PF13518)
1069533.Sinf_1003			+
1069533.Sinf_1263			+
1069533.Sinf_1057				(PF01610)	not used
1069533.Sinf_1435			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================