Metamenu

Effective results for Brevibacillus laterosporus LMG 15441 (eggnog40)

Summary

Number of putative secreted proteins: 138
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 138 proteins (5 high, 133 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1042163.BRLA_c46170(PF00668) (PF13745)(ER)
1042163.BRLA_c15890(PF00668) (PF13745)mitochondrial
1042163.BRLA_c15870(PF00668) (PF13745)(mitochondrial)
1042163.BRLA_c34790(PF00668) (PF13745)(mitochondrial)
1042163.BRLA_c02080(PF13276)(mitochondrial)
1042163.BRLA_c17100(PF13276)(mitochondrial)
1042163.BRLA_c21170(PF13276)(mitochondrial)
1042163.BRLA_c15220(PF01497)ER
1042163.BRLA_c26720(PF10662)(mitochondrial)
1042163.BRLA_c00350(PF01520)ER
1042163.BRLA_c43010PF03318mitochondrial
1042163.BRLA_c19690(PF01497)ER
1042163.BRLA_c22640(PF13276)(mitochondrial)
1042163.BRLA_c36760(PF01497)ER
1042163.BRLA_c41430(PF01497)ER
1042163.BRLA_c16010(PF01497)ER
1042163.BRLA_c47580(PF01497)ER
1042163.BRLA_c24120(PF01497)ER; (ER)
1042163.BRLA_c35460(PF01497)ER
1042163.BRLA_c08770(PF01497)ER
1042163.BRLA_c06440(PF01497)(ER); (mitochondrial)
1042163.BRLA_c41560(PF01497)(ER); ER
1042163.BRLA_c45040(PF01520)ER
1042163.BRLA_c25170(PF10662)mitochondrial
1042163.BRLA_c02140(PF01497)ER
1042163.BRLA_c21900(PF01497)ER
1042163.BRLA_c13500(PF06280)ER
1042163.BRLA_c30570(PF02681)ER
1042163.BRLA_c15240(PF13276)(mitochondrial)
1042163.BRLA_c15060(PF01497)ER
1042163.BRLA_c07110(PF06280)ER
1042163.BRLA_c02500(PF01520)ER
1042163.BRLA_c13780(PF01497)ER
1042163.BRLA_c22160(PF01520)ER
1042163.BRLA_c04490(PF01520)ER
1042163.BRLA_c45800PF01477ER
1042163.BRLA_c21160PF03318ER
1042163.BRLA_c01670(PF01497)ER
1042163.BRLA_c15880(PF00668) (PF13745)
1042163.BRLA_c49130(PF00668) (PF13745)
1042163.BRLA_c26500(PF00668) (PF13745)
1042163.BRLA_c27750(PF00668) (PF08242)
1042163.BRLA_c21400(PF00668) (PF13745)
1042163.BRLA_c28240(PF13276)(mitochondrial)
1042163.BRLA_c38250(PF00668) (PF13745)
1042163.BRLA_c38380(PF00668) (PF13745)
1042163.BRLA_c20620(PF08732)(mitochondrial)
1042163.BRLA_c17390(PF13276)(mitochondrial)
1042163.BRLA_c23670(PF13276)(mitochondrial)
1042163.BRLA_c21200(PF13276)mitochondrial; not used
1042163.BRLA_c46160(PF00668) (PF13745)
1042163.BRLA_c10920(PF02681)(plastid)
1042163.BRLA_c23680(PF13518)(mitochondrial)
1042163.BRLA_c27780(PF00668) (PF08242)
1042163.BRLA_c38730(PF00668) (PF13745)
1042163.BRLA_c25530(PF00668) (PF13745)
1042163.BRLA_c38360(PF00668) (PF13745)
1042163.BRLA_c38740(PF00668) (PF13745)
1042163.BRLA_c39340(PF00668) (PF13745)
1042163.BRLA_c16000(PF01497)(ER)
1042163.BRLA_c38370(PF13745) (PF00668)
1042163.BRLA_c25560(PF00668) (PF13745)
1042163.BRLA_c15820(PF13745) (PF00668)
1042163.BRLA_c25580(PF00668) (PF13745)
1042163.BRLA_c28230(PF13518)(mitochondrial)
1042163.BRLA_c38770(PF00668) (PF13745)
1042163.BRLA_c39310(PF00668) (PF13745)
1042163.BRLA_c25570(PF00668) (PF13745)
1042163.BRLA_c15900(PF13745) (PF00668)
1042163.BRLA_c21460(PF13276)(mitochondrial)
1042163.BRLA_c26480(PF00668) (PF13745)
1042163.BRLA_c17400(PF13518)(mitochondrial)
1042163.BRLA_c38080(PF00668) (PF13745)
1042163.BRLA_c26490(PF00668) (PF13745)
1042163.BRLA_c39330(PF00668) (PF13745)
1042163.BRLA_c05540(PF01497)(mitochondrial)
1042163.BRLA_c25620(PF00668) (PF13745)
1042163.BRLA_c39320(PF13745) (PF00668)
1042163.BRLA_c28020(PF00668) (PF13745)
1042163.BRLA_c15860(PF00668) (PF13745)
1042163.BRLA_c26600(PF01391)
1042163.BRLA_c02060(PF13518)
1042163.BRLA_c38050(PF00668)
1042163.BRLA_c45900(PF02867)
1042163.BRLA_c39010(PF02867)
1042163.BRLA_c15770(PF13427)
1042163.BRLA_c35000(PF13276)
1042163.BRLA_c25970(PF01497)
1042163.BRLA_c26610(PF01391)
1042163.BRLA_c45910(PF02867)
1042163.BRLA_c27920(PF01497)
1042163.BRLA_c21180(PF13518)
1042163.BRLA_c35740(PF01497)
1042163.BRLA_c34760(PF08242)
1042163.BRLA_c18010(PF13276)
1042163.BRLA_c34770(PF08242)
1042163.BRLA_c38920PF01477
1042163.BRLA_c24110(PF01497)
1042163.BRLA_c36920PF09412
1042163.BRLA_c38390(PF00668)
1042163.BRLA_c10910(PF01497)
1042163.BRLA_c19350(PF01391)
1042163.BRLA_c27770(PF08242)
1042163.BRLA_c27910(PF00165)
1042163.BRLA_c45890(PF02867)
1042163.BRLA_c25520(PF00668)
1042163.BRLA_c01680(PF01497)
1042163.BRLA_c19640(PF13427)
1042163.BRLA_c47790(PF08964)
1042163.BRLA_c05460(PF13276)
1042163.BRLA_c30730(PF01419)
1042163.BRLA_c26940(PF01520)
1042163.BRLA_c25330(PF06249)
1042163.BRLA_c47960(PF01391)
1042163.BRLA_c39500(PF13276)
1042163.BRLA_c45980(PF00303)
1042163.BRLA_c26840(PF06249)
1042163.BRLA_c37290(PF13276)
1042163.BRLA_c37610(PF13276)
1042163.BRLA_c45990(PF00303)not used
1042163.BRLA_c44640(PF01391)
1042163.BRLA_c23320(PF00303)
1042163.BRLA_c28530(PF01520)
1042163.BRLA_c19850(PF01520)
1042163.BRLA_c35890(PF13518)
1042163.BRLA_c27040(PF13276)
1042163.BRLA_c17090(PF13518)
1042163.BRLA_c06180(PF01391)
1042163.BRLA_c25600(PF00668)
1042163.BRLA_c25590(PF00668)
1042163.BRLA_c18270(PF01520)
1042163.BRLA_c15250(PF13518)
1042163.BRLA_c16250(PF13276)
1042163.BRLA_c00800(PF01391)
1042163.BRLA_c20370(PF13276)
1042163.BRLA_c28030(PF00668)
1042163.BRLA_c41670(PF02867)
1042163.BRLA_c35900(PF13276)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================