Effective results for Haemophilus haemolyticus M19501 (eggnog40)

Summary

Number of putative secreted proteins: 30
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 30 proteins (5 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1028803.GG9_0044				(PF13518)	(mitochondrial)
1028803.GG9_0074				(PF04886)	(ER)
1028803.GG9_1316				(PF03948) (PF01281)
1028803.GG9_0522				(PF03948) (PF01281)
1028803.GG9_0896				(PF10063)
1028803.GG9_1313				(PF01250)
1028803.GG9_0525				(PF01250)
1028803.GG9_1334				(PF13518)
1028803.GG9_1337				(PF13184)
1028803.GG9_1336				(PF11987)
1028803.GG9_1330				(PF13518)
1028803.GG9_0936				(PF13518)
1028803.GG9_0937				(PF02033)
1028803.GG9_0932				(PF13184)
1028803.GG9_0933				(PF11987)
1028803.GG9_1333				(PF02033)
1028803.GG9_1332				(PF01509)
1028803.GG9_1338				(PF02576)
1028803.GG9_1197				(PF00958)
1028803.GG9_0913				PF00572
1028803.GG9_0914				PF00380
1028803.GG9_0266				(PF10571)
1028803.GG9_1018				(PF13518)
1028803.GG9_0938				(PF01509)
1028803.GG9_1354				PF00380
1028803.GG9_0931				(PF02576)
1028803.GG9_1355				PF00572
1028803.GG9_0191				PF02551
1028803.GG9_0941				(PF13518)
1028803.GG9_1202				(PF00958)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================