Effective results for Streptomyces cattleya NRRL 8057 = DSM 46488 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 63 proteins (5 high, 58 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
1003195.SCAT_0183				(PF08242)	(ER)
1003195.SCAT_4833				(PF12222)	mitochondrial
1003195.SCAT_5006				(PF01927)	mitochondrial
1003195.SCAT_5670				(PF02057)	mitochondrial
1003195.SCAT_2670				(PF08242)	mitochondrial
1003195.SCAT_2650				(PF09924)	(ER)
1003195.SCAT_1221				(PF12051)	mitochondrial
1003195.SCAT_3732				(PF13613) (PF01609)
1003195.SCAT_0148				(PF13613) (PF01609)
1003195.SCAT_0182				(PF13613) (PF01609)
1003195.SCAT_2310				(PF13613) (PF01609)
1003195.SCAT_3577				(PF08242)	plastid
1003195.SCAT_3744				(PF13613) (PF01609)
1003195.SCAT_4984				(PF13613) (PF01609)
1003195.SCAT_4297				(PF13613) (PF01609)
1003195.SCAT_3166				(PF13613) (PF01609)
1003195.SCAT_5820				(PF13613) (PF01609)
1003195.SCAT_3403				(PF13613) (PF01609)
1003195.SCAT_2536				(PF13613) (PF01609)
1003195.SCAT_2987				(PF13613) (PF01609)
1003195.SCAT_5412				(PF09924)	(ER)
1003195.SCAT_1510				(PF09924)	(ER)
1003195.SCAT_3737				(PF13551)
1003195.SCAT_1129				(PF13936)
1003195.SCAT_4268				PF16715
1003195.SCAT_2209				(PF12051)
1003195.SCAT_0529				(PF01135)
1003195.SCAT_3359				(PF13936)
1003195.SCAT_1217				(PF08242)
1003195.SCAT_1516				(PF01609)
1003195.SCAT_3159				(PF13551)
1003195.SCAT_2633				(PF01609)
1003195.SCAT_3238				(PF01135)
1003195.SCAT_4875				(PF01532)
1003195.SCAT_3416				PF08213	not used
1003195.SCAT_3647				(PF09445)
1003195.SCAT_5780				(PF01609)
1003195.SCAT_0901				PF16715
1003195.SCAT_3579				(PF08242)
1003195.SCAT_5116				(PF13551)
1003195.SCAT_2819				(PF01135)
1003195.SCAT_5005				(PF01927)
1003195.SCAT_5587				(PF09924)
1003195.SCAT_1482				(PF13936)
1003195.SCAT_0530				(PF01135)
1003195.SCAT_1428				(PF01609)
1003195.SCAT_5509				(PF01927)
1003195.SCAT_3160				(PF13551)
1003195.SCAT_0849				(PF03803)
1003195.SCAT_4653				(PF01135)
1003195.SCAT_0380				(PF05185)
1003195.SCAT_3618				(PF00163)
1003195.SCAT_5821				PF08939
1003195.SCAT_0198				PF16715
1003195.SCAT_2673				(PF13936)
1003195.SCAT_3675				(PF13936)
1003195.SCAT_3249				(PF01135)
1003195.SCAT_0242				(PF01609)
1003195.SCAT_5320				(PF00163)
1003195.SCAT_2281				(PF13936)	not used
1003195.SCAT_0093				(PF01135)
1003195.SCAT_5061				(PF01135)
1003195.SCAT_5064				(PF09924)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================