Effective results for Paenibacillus zanthoxyli JH29 (refseq)

Summary

Number of putative secreted proteins: 73
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 73 proteins (14 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
WP_025691311.1				(PF13802) (PF16338) (PF17137)	ER
WP_025693230.1				(PF13802) (PF16338) (PF17137)	ER; (ER)
WP_025691049.1				(PF13802) (PF16338) (PF17137)	ER
WP_025688765.1				PF08244 (PF00251)	(mitochondrial)
WP_025693217.1				PF08244 (PF00251)	ER
WP_051459264.1				PF08244 (PF00251)	(ER); ER
WP_025690453.1				PF08244 (PF00251)	ER
WP_025689840.1				(PF13394)	ER; (ER)
WP_025691226.1				PF10250	(ER); (mitochondrial)
WP_025693277.1				(PF09683)	ER
WP_025689669.1				(PF13787)	ER
WP_025689718.1				(PF13787)	ER
WP_025691050.1				(PF16657)	ER
WP_025692977.1				(PF13802) (PF16338) (PF17137)
WP_025692956.1				(PF00148)	(mitochondrial)
WP_025692255.1				(PF13394)	(mitochondrial)
WP_051459346.1				PF08244 (PF00251)
WP_025690763.1				(PF00707)	(plastid)
WP_025689213.1				PF08244 (PF00251)
WP_025690454.1				PF08244 (PF00251)
WP_025691716.1				PF08244 (PF00251)
WP_051459291.1				PF08244 (PF00251)
WP_025689944.1				(PF06500)	(mitochondrial)
WP_051459307.1				PF08244 (PF00251)
WP_025691225.1				PF10250	(ER)
WP_025691239.1				PF08244 (PF00251)
WP_025690933.1				PF08244 (PF00251)
WP_025693118.1				(PF00148)	(mitochondrial)
WP_025692213.1				(PF00707)
WP_025692955.1				(PF00148)
WP_025690430.1				(PF13394)
WP_025689943.1				(PF06500)
WP_025688017.1				(PF02224)
WP_025691410.1				(PF16804)
WP_025688636.1				(PF06500)
WP_051459456.1				(PF16657)
WP_025688147.1				(PF13565)
WP_025693119.1				(PF00148)
WP_025690854.1				(PF13565)
WP_025689056.1				(PF13394)
WP_025692946.1				(PF00148)
WP_025692944.1				(PF00148)
WP_025692942.1				(PF00148)
WP_025688444.1				(PF03318)
WP_025688384.1				(PF16657)
WP_025690719.1				(PF16657)
WP_025692953.1				(PF00148)
WP_025692017.1				(PF00148)
WP_025689234.1				(PF16657)
WP_025691111.1				(PF00148)
WP_025692571.1				(PF13394)
WP_025691948.1				(PF13565)
WP_025691060.1				(PF00148)
WP_025690364.1				(PF00148)
WP_025690366.1				(PF00148)
WP_025691293.1				(PF02224)
WP_025690368.1				(PF00148)
WP_025688951.1				(PF13394)
WP_025689610.1				(PF16657)
WP_025690825.1				(PF00148)
WP_025692945.1				(PF00148)
WP_025691059.1				(PF00148)
WP_025689398.1				(PF13565)
WP_025693312.1				(PF13565)
WP_025690826.1				(PF00148)
WP_025690905.1				(PF13394)
WP_036734862.1				(PF13565)
WP_025691571.1				(PF00165)
WP_025689767.1				(PF13394)
WP_025692018.1				(PF00148)
WP_025691580.1				(PF13565)
WP_025690367.1				(PF00148)
WP_025690732.1				(PF16657)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================