Effective results for Prevotella pallens ATCC 700821 (eggnog40)

Summary

Number of putative secreted proteins: 70
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 70 proteins (2 high, 68 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
997353.HMPREF9144_2515(PF15588)(mitochondrial)
997353.HMPREF9144_2161(PF13306)ER
997353.HMPREF9144_1408(PF00959)ER
997353.HMPREF9144_0848(PF13306)ER
997353.HMPREF9144_0543(PF13306)ER
997353.HMPREF9144_1570(PF13306)ER
997353.HMPREF9144_1824(PF03432)(mitochondrial)
997353.HMPREF9144_0417(PF03051)ER
997353.HMPREF9144_2210(PF00959)ER
997353.HMPREF9144_1866(PF13306)ER
997353.HMPREF9144_2442(PF12256)ER
997353.HMPREF9144_0011(PF03051)ER
997353.HMPREF9144_0319(PF13306)ER
997353.HMPREF9144_1469(PF03051)ER
997353.HMPREF9144_0828PF12812(ER); ER
997353.HMPREF9144_0497(PF13306)ER
997353.HMPREF9144_2332(PF13306)ER
997353.HMPREF9144_0582(PF03412)mitochondrial
997353.HMPREF9144_2538(PF05686)(mitochondrial)
997353.HMPREF9144_0122(PF13306)ER
997353.HMPREF9144_0125(PF13306)ER
997353.HMPREF9144_1455(PF12256)ER
997353.HMPREF9144_2430(PF13306)ER
997353.HMPREF9144_1888(PF13306)ER
997353.HMPREF9144_0734(PF13306)ER
997353.HMPREF9144_2033(PF13155) (PF01807)
997353.HMPREF9144_1826(PF13155) (PF01807)
997353.HMPREF9144_0963(PF07837) (PF02971)
997353.HMPREF9144_0205(PF13306)(ER)
997353.HMPREF9144_2698(PF05034) (PF07476)
997353.HMPREF9144_0822(PF01715)(mitochondrial)
997353.HMPREF9144_0049(PF13155) (PF01807)
997353.HMPREF9144_1882(PF13155) (PF01807)
997353.HMPREF9144_2770(PF13306)
997353.HMPREF9144_0926(PF16314)
997353.HMPREF9144_2700(PF14330)
997353.HMPREF9144_0540(PF05693)
997353.HMPREF9144_2009(PF03432)
997353.HMPREF9144_1149(PF01610)
997353.HMPREF9144_2494(PF00959)
997353.HMPREF9144_2736(PF03412)
997353.HMPREF9144_2739(PF03412)
997353.HMPREF9144_2029(PF03432)
997353.HMPREF9144_1166(PF01610)not used
997353.HMPREF9144_1581PF16269
997353.HMPREF9144_0357(PF03432)
997353.HMPREF9144_1809(PF01610)
997353.HMPREF9144_2822(PF01610)
997353.HMPREF9144_2857(PF01610)not used
997353.HMPREF9144_0511(PF05970)
997353.HMPREF9144_1101(PF01715)
997353.HMPREF9144_2455(PF00959)not used
997353.HMPREF9144_1250(PF01610)
997353.HMPREF9144_2840(PF02689)not used
997353.HMPREF9144_2847(PF05970)not used
997353.HMPREF9144_1133(PF03630)
997353.HMPREF9144_0537(PF00959)
997353.HMPREF9144_1302(PF01610)not used
997353.HMPREF9144_1307(PF01610)
997353.HMPREF9144_2472(PF03432)
997353.HMPREF9144_2787(PF13155)
997353.HMPREF9144_1249(PF01610)not used
997353.HMPREF9144_1854(PF13306)
997353.HMPREF9144_2744(PF03412)
997353.HMPREF9144_2741(PF03412)
997353.HMPREF9144_0052(PF03432)
997353.HMPREF9144_0468(PF03412)
997353.HMPREF9144_1423(PF03432)
997353.HMPREF9144_1426(PF03412)
997353.HMPREF9144_2358(PF01610)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================