Metamenu

Effective results for Paenibacillus sp. HGF7 (eggnog40)

Summary

Number of putative secreted proteins: 171
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 171 proteins (4 high, 167 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
944559.HMPREF9413_3398(PF08124) (PF00395) (PF02278) (PF02884)ER
944559.HMPREF9413_1057(PF02839) (PF00704) (PF00041)ER
944559.HMPREF9413_1282(PF08124) (PF02278) (PF02884)ER
944559.HMPREF9413_0457(PF02839) (PF00704) (PF00041)ER
944559.HMPREF9413_4229(PF02839) (PF00704) (PF00041)ER
944559.HMPREF9413_5274(PF08124) (PF02278) (PF02884)ER
944559.HMPREF9413_3522(PF02839) (PF00704) (PF00041)mitochondrial
944559.HMPREF9413_4558(PF09992) (PF00395) (PF16656)ER
944559.HMPREF9413_5056(PF02839) (PF00041)ER
944559.HMPREF9413_3048(PF02839) (PF00041)(ER); ER
944559.HMPREF9413_1349(PF00704) (PF00041)ER
944559.HMPREF9413_1437(PF12733) (PF00395)ER
944559.HMPREF9413_2418(PF00395) (PF00704)(ER)
944559.HMPREF9413_2707(PF12733) (PF00395)ER
944559.HMPREF9413_2046(PF02839) (PF00041)ER
944559.HMPREF9413_3058(PF14592) (PF00041)ER; mitochondrial
944559.HMPREF9413_4068(PF01373) (PF03423)ER
944559.HMPREF9413_2696(PF00395) (PF00041)ER
944559.HMPREF9413_5456(PF02839) (PF00704) (PF00041)(ER)
944559.HMPREF9413_2713(PF12733) (PF00395)ER
944559.HMPREF9413_4404(PF02839) (PF00041)mitochondrial; (mitochondrial)
944559.HMPREF9413_5209(PF00395) (PF00704)ER
944559.HMPREF9413_1175(PF00395)ER
944559.HMPREF9413_1173PF03059(ER)
944559.HMPREF9413_3536(PF00395)ER
944559.HMPREF9413_0361(PF00395)ER
944559.HMPREF9413_3986(PF01497)ER
944559.HMPREF9413_2272(PF01497)ER
944559.HMPREF9413_5580(PF01497)ER
944559.HMPREF9413_1113(PF02278)mitochondrial; (mitochondrial)
944559.HMPREF9413_3042(PF04450)ER
944559.HMPREF9413_1755(PF01497)ER
944559.HMPREF9413_3283(PF00041)ER
944559.HMPREF9413_4240(PF14592)ER
944559.HMPREF9413_1506(PF04450)ER
944559.HMPREF9413_1260(PF00041)ER
944559.HMPREF9413_1190(PF01497)ER
944559.HMPREF9413_1202(PF01497)ER
944559.HMPREF9413_1205(PF01497)mitochondrial
944559.HMPREF9413_4699(PF16889)(ER)
944559.HMPREF9413_2849(PF02308)(ER)
944559.HMPREF9413_5318(PF03403)ER
944559.HMPREF9413_4223(PF00395)(mitochondrial); plastid
944559.HMPREF9413_4347(PF01497)ER
944559.HMPREF9413_5103(PF00395)ER
944559.HMPREF9413_2688(PF09992)(mitochondrial); plastid
944559.HMPREF9413_2685(PF00704)ER
944559.HMPREF9413_2687PF01393ER
944559.HMPREF9413_5664(PF01497)ER
944559.HMPREF9413_4423(PF02839) (PF00041)(mitochondrial)
944559.HMPREF9413_4064(PF00395)ER
944559.HMPREF9413_5295(PF16656)ER
944559.HMPREF9413_5124(PF00395)ER
944559.HMPREF9413_0516(PF09992)ER
944559.HMPREF9413_4400(PF02894)(mitochondrial)
944559.HMPREF9413_2497(PF03644)ER
944559.HMPREF9413_5141(PF00395)ER
944559.HMPREF9413_0539(PF00395)ER
944559.HMPREF9413_5168(PF02308)ER
944559.HMPREF9413_4619(PF00395)ER
944559.HMPREF9413_5425(PF02894)(mitochondrial)
944559.HMPREF9413_1409(PF00395)(ER); ER
944559.HMPREF9413_2226(PF01497)ER
944559.HMPREF9413_5235(PF02308)ER
944559.HMPREF9413_2201(PF01497)ER
944559.HMPREF9413_1786(PF01497)ER
944559.HMPREF9413_2265(PF03403)ER
944559.HMPREF9413_4552(PF00395)ER
944559.HMPREF9413_0426(PF00395)ER
944559.HMPREF9413_4944(PF09992)ER
944559.HMPREF9413_0887(PF00395)ER
944559.HMPREF9413_3293(PF00395)ER
944559.HMPREF9413_4646(PF06925)(mitochondrial)
944559.HMPREF9413_4779(PF00395)ER; (ER)
944559.HMPREF9413_5777(PF00704)ER
944559.HMPREF9413_5085(PF03403)ER
944559.HMPREF9413_4020(PF01497)ER
944559.HMPREF9413_0612(PF06925)(mitochondrial)
944559.HMPREF9413_3757(PF03851)(mitochondrial)
944559.HMPREF9413_0589(PF00395)ER
944559.HMPREF9413_2308(PF01497)ER
944559.HMPREF9413_4219(PF00395)ER
944559.HMPREF9413_2445(PF00395)ER
944559.HMPREF9413_1943(PF12733)ER
944559.HMPREF9413_4303(PF01497)ER
944559.HMPREF9413_1707(PF00395)(mitochondrial)
944559.HMPREF9413_3441(PF01497)ER
944559.HMPREF9413_0521(PF00395)ER
944559.HMPREF9413_3129(PF00704)ER
944559.HMPREF9413_2839(PF00395)(mitochondrial)
944559.HMPREF9413_0102(PF00395)ER
944559.HMPREF9413_4785(PF01676)ER; (ER)
944559.HMPREF9413_2952(PF00395)ER
944559.HMPREF9413_1156(PF02894)(ER); (mitochondrial)
944559.HMPREF9413_2843(PF00704)mitochondrial
944559.HMPREF9413_0433(PF09992)(mitochondrial)
944559.HMPREF9413_5890(PF00395) (PF00041)
944559.HMPREF9413_5893(PF12733) (PF00395)
944559.HMPREF9413_0941(PF00395)(ER)
944559.HMPREF9413_5210(PF00395)(mitochondrial)
944559.HMPREF9413_2762(PF16656) (PF00041)
944559.HMPREF9413_1213(PF01497)(ER)
944559.HMPREF9413_4168(PF02839) (PF00704)
944559.HMPREF9413_2271(PF01497)
944559.HMPREF9413_0648(PF06925)
944559.HMPREF9413_0649(PF06925)
944559.HMPREF9413_2640(PF01676)not used
944559.HMPREF9413_4973(PF02308)
944559.HMPREF9413_3705(PF02894)
944559.HMPREF9413_5704(PF16861)
944559.HMPREF9413_1131(PF02709)
944559.HMPREF9413_3289(PF02894)
944559.HMPREF9413_3062(PF00190)
944559.HMPREF9413_3027(PF00190)
944559.HMPREF9413_1204(PF01497)
944559.HMPREF9413_5819(PF02894)
944559.HMPREF9413_4295(PF00190)
944559.HMPREF9413_5105(PF03851)
944559.HMPREF9413_0845(PF01497)
944559.HMPREF9413_1037(PF02894)
944559.HMPREF9413_4428(PF02403)
944559.HMPREF9413_3436(PF01676)
944559.HMPREF9413_3457(PF02894)
944559.HMPREF9413_3663(PF01676)
944559.HMPREF9413_4561(PF16889)
944559.HMPREF9413_2538(PF00707)
944559.HMPREF9413_0870(PF02308)
944559.HMPREF9413_4349(PF01497)
944559.HMPREF9413_2512(PF02894)
944559.HMPREF9413_5393PF05183
944559.HMPREF9413_5183(PF14328)
944559.HMPREF9413_5820(PF02894)
944559.HMPREF9413_2225(PF01497)
944559.HMPREF9413_1144(PF01947)
944559.HMPREF9413_1143(PF02709)
944559.HMPREF9413_2268(PF02839)
944559.HMPREF9413_2266(PF03403)
944559.HMPREF9413_3504(PF02894)
944559.HMPREF9413_3502(PF02894)
944559.HMPREF9413_1123(PF02894)
944559.HMPREF9413_3290(PF02894)
944559.HMPREF9413_4642(PF00707)
944559.HMPREF9413_4967(PF00395)
944559.HMPREF9413_4905(PF00704)
944559.HMPREF9413_3735(PF02894)
944559.HMPREF9413_5641(PF02894)
944559.HMPREF9413_5081(PF01676)
944559.HMPREF9413_0072(PF16332)
944559.HMPREF9413_2013(PF08795)
944559.HMPREF9413_2012(PF08795)
944559.HMPREF9413_4304(PF01497)
944559.HMPREF9413_1518(PF01497)
944559.HMPREF9413_1515(PF00041)
944559.HMPREF9413_1214(PF01497)
944559.HMPREF9413_2307(PF01497)
944559.HMPREF9413_3893(PF02709)
944559.HMPREF9413_0604(PF02403)
944559.HMPREF9413_0756(PF02894)
944559.HMPREF9413_0976(PF02894)
944559.HMPREF9413_5115(PF01497)
944559.HMPREF9413_5614(PF01497)
944559.HMPREF9413_3850(PF02894)
944559.HMPREF9413_1257PF03059
944559.HMPREF9413_0520(PF00395)
944559.HMPREF9413_1924(PF02894)
944559.HMPREF9413_5411(PF00395)
944559.HMPREF9413_0661(PF00395)
944559.HMPREF9413_3834(PF01497)
944559.HMPREF9413_4501(PF16861)
944559.HMPREF9413_4500(PF16861)
944559.HMPREF9413_4503(PF16861)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================