Effective results for Shewanella sp. ANA-3 (eggnog40)

Summary

Number of putative secreted proteins: 706
- Predicted by EffectiveT3: 250 (high confidence), 263 (low confidence)
- Predicted by EffectiveCCBD: 35 within, 17 before, 44 behind expected region 25..70aa
- Predicted by T4SEpre: 125
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 24 proteins (1 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type IV, Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
94122.Shewana3_3304			+	(PF05922) (PF02225)	(ER)
94122.Shewana3_3173		+	+		ER
94122.Shewana3_1408		(>)	+		ER
94122.Shewana3_3545				(PF05922) (PF02225)	ER
94122.Shewana3_1690				(PF05922) (PF02225)	ER
94122.Shewana3_3691	+			(PF16983)	(ER)
94122.Shewana3_0918	+				(ER)
94122.Shewana3_3177		(>)			(mitochondrial)
94122.Shewana3_4000		+			ER
94122.Shewana3_2512		(>)			ER
94122.Shewana3_1187			+		ER
94122.Shewana3_0923		+			ER
94122.Shewana3_2745				(PF02225)	ER
94122.Shewana3_2585		(>)			ER
94122.Shewana3_3584			+		ER
94122.Shewana3_3900			+		ER
94122.Shewana3_2363			+		ER; (ER)
94122.Shewana3_3168			+		ER
94122.Shewana3_3161		+			ER
94122.Shewana3_0809			+		ER
94122.Shewana3_0112			+		ER
94122.Shewana3_1889	+				(mitochondrial)
94122.Shewana3_3974		+			ER
94122.Shewana3_3480	+				ER
94122.Shewana3_3711			+		ER
94122.Shewana3_1448			+		(mitochondrial)
94122.Shewana3_3626		(>)			ER
94122.Shewana3_0725			+		ER
94122.Shewana3_0431		(>)			ER
94122.Shewana3_2534		(>)			ER
94122.Shewana3_3563			+		ER
94122.Shewana3_3362	+				ER; (ER)
94122.Shewana3_3142				(PF02225)	(ER)
94122.Shewana3_3148	+				(mitochondrial); plastid
94122.Shewana3_1239			+		ER
94122.Shewana3_0952		(>)			ER
94122.Shewana3_0383		+			ER
94122.Shewana3_1949			+		ER
94122.Shewana3_0898			+		ER
94122.Shewana3_0964		+			ER
94122.Shewana3_1163	+				(mitochondrial); plastid
94122.Shewana3_1160	+				(mitochondrial); (plastid)
94122.Shewana3_1544		+			ER
94122.Shewana3_3945			+		ER
94122.Shewana3_3941	+				(mitochondrial); plastid
94122.Shewana3_1613			+		ER
94122.Shewana3_1616	+				(ER)
94122.Shewana3_3541			+		ER
94122.Shewana3_3611			+		ER
94122.Shewana3_3729			+		ER
94122.Shewana3_2548				(PF02225)	ER
94122.Shewana3_4093		(>)			(mitochondrial)
94122.Shewana3_1595			+		(ER)
94122.Shewana3_2007	+				(mitochondrial); mitochondrial
94122.Shewana3_2133		(<)			ER
94122.Shewana3_3442	+				mitochondrial
94122.Shewana3_2531			+		ER
94122.Shewana3_2733	+				ER
94122.Shewana3_1364			+		ER
94122.Shewana3_1109		+			ER
94122.Shewana3_1580				(PF04970)	ER
94122.Shewana3_1585		(>)			ER
94122.Shewana3_1740				(PF02225)	ER
94122.Shewana3_2457				(PF09127)	ER
94122.Shewana3_2588		+			(ER)
94122.Shewana3_2583		+			(ER); (mitochondrial)
94122.Shewana3_3290		(>)			ER
94122.Shewana3_3276		(>)			(mitochondrial); mitochondrial
94122.Shewana3_0882			+		ER
94122.Shewana3_4073		(<)			ER
94122.Shewana3_4072			+		ER
94122.Shewana3_1826	+				(ER); (plastid)
94122.Shewana3_3643			+		ER
94122.Shewana3_2254			+		ER
94122.Shewana3_0699			+		ER
94122.Shewana3_0036			+		ER
94122.Shewana3_0528				(PF05548)	ER
94122.Shewana3_0831			+		ER
94122.Shewana3_0836		(>)			ER
94122.Shewana3_1014		(>)			ER
94122.Shewana3_1657		(>)			ER
94122.Shewana3_3254			+		ER
94122.Shewana3_3652	(+)		+		(mitochondrial)
94122.Shewana3_0501			+		ER
94122.Shewana3_0680		(<)			ER
94122.Shewana3_3321			+		ER
94122.Shewana3_4053			+		ER
94122.Shewana3_1484		(<)			(ER)
94122.Shewana3_1669			+		mitochondrial; (mitochondrial)
94122.Shewana3_3797	+				(ER)
94122.Shewana3_2451			+		(ER)
94122.Shewana3_1327		(>)			ER
94122.Shewana3_2410				(PF08487)	ER; (ER)
94122.Shewana3_2896			+		(mitochondrial)
94122.Shewana3_2521			+		(mitochondrial)
94122.Shewana3_3301	+			(PF05922) (PF02225)
94122.Shewana3_3126			+		ER
94122.Shewana3_0797				(PF02010) (PF02225)	(mitochondrial)
94122.Shewana3_4036	+				(ER)
94122.Shewana3_0803			+		(mitochondrial)
94122.Shewana3_1443				(PF05922) (PF02225)	(ER)
94122.Shewana3_1045			+		mitochondrial
94122.Shewana3_3116			+		ER
94122.Shewana3_4027			+		ER
94122.Shewana3_0904			+		ER
94122.Shewana3_2433			+		ER
94122.Shewana3_2435		(<)			(ER)
94122.Shewana3_3924			+		(ER)
94122.Shewana3_1417	+				(mitochondrial); plastid
94122.Shewana3_3809			+		mitochondrial
94122.Shewana3_0644		(>)			ER; (ER)
94122.Shewana3_3258		(<)			mitochondrial
94122.Shewana3_1993		+			ER
94122.Shewana3_1422	+				(ER)
94122.Shewana3_0673	(+)				(mitochondrial)
94122.Shewana3_1188	(+)				(ER)
94122.Shewana3_2632	(+)	+	+
94122.Shewana3_2183	(+)				ER
94122.Shewana3_2252	+				(mitochondrial)
94122.Shewana3_0963	(+)				(mitochondrial); plastid
94122.Shewana3_0064	(+)				ER
94122.Shewana3_0119	(+)				(mitochondrial); mitochondrial
94122.Shewana3_1157	(+)				(ER)
94122.Shewana3_1149	+				(plastid)
94122.Shewana3_3562		+			(plastid)
94122.Shewana3_0609	+				(plastid)
94122.Shewana3_0137	(+)				mitochondrial; (mitochondrial)
94122.Shewana3_1394	(+)				ER
94122.Shewana3_3601	(+)				(ER)
94122.Shewana3_0705	+	(>)
94122.Shewana3_1389	(+)				(mitochondrial)
94122.Shewana3_1370	+				(plastid)
94122.Shewana3_3145	+				(mitochondrial)
94122.Shewana3_1431	+				(plastid)
94122.Shewana3_4081	(+)				ER
94122.Shewana3_0502				(PF02225)	(ER)
94122.Shewana3_2104	(+)				ER
94122.Shewana3_2854	+				(plastid)
94122.Shewana3_3859			+		(mitochondrial)
94122.Shewana3_3070	+		+
94122.Shewana3_3769	(+)				(mitochondrial)
94122.Shewana3_1914	(+)				ER
94122.Shewana3_2933	+		+
94122.Shewana3_0743	(+)				(mitochondrial)
94122.Shewana3_3434	+				ER; not used
94122.Shewana3_2543			+		(ER)
94122.Shewana3_2692	+	(>)
94122.Shewana3_2696	(+)				(ER)
94122.Shewana3_3506	+				(plastid)
94122.Shewana3_2875	+		+
94122.Shewana3_2271			+		(mitochondrial)
94122.Shewana3_2306	(+)	(>)			plastid
94122.Shewana3_3090	+				(plastid)
94122.Shewana3_2673		(<)			(ER)
94122.Shewana3_1333	+				plastid
94122.Shewana3_1332	+				plastid
94122.Shewana3_1331	+				(mitochondrial)
94122.Shewana3_2918	+		+
94122.Shewana3_1060	+	(>)
94122.Shewana3_3405	+				(mitochondrial)
94122.Shewana3_3558	+				plastid
94122.Shewana3_1927	+	+
94122.Shewana3_1256	+		+
94122.Shewana3_2523	+				(plastid)
94122.Shewana3_3998	(+)				(ER); (mitochondrial)
94122.Shewana3_2550	+				(plastid)
94122.Shewana3_3825	(+)				mitochondrial; (mitochondrial)
94122.Shewana3_0231	+				(plastid)
94122.Shewana3_1347	+				(plastid)
94122.Shewana3_0331	+		+
94122.Shewana3_1262	(+)				mitochondrial; (mitochondrial)
94122.Shewana3_1319		(>)	+
94122.Shewana3_1446	(+)				ER
94122.Shewana3_2060	+				(plastid)
94122.Shewana3_2339				(PF03199) (PF03917)
94122.Shewana3_3754	(+)				ER
94122.Shewana3_2570	(+)				(ER)
94122.Shewana3_1307		(>)			(ER)
94122.Shewana3_0871	(+)				(mitochondrial)
94122.Shewana3_1695	+				(plastid)
94122.Shewana3_1058	+	+
94122.Shewana3_3926	+				(plastid)
94122.Shewana3_3108	+				(plastid)
94122.Shewana3_0647	+				(mitochondrial)
94122.Shewana3_0007	+				(mitochondrial)
94122.Shewana3_1990	(+)	+			(plastid)
94122.Shewana3_1424	(+)				(plastid)
94122.Shewana3_1421	+
94122.Shewana3_1420	+
94122.Shewana3_2644	+
94122.Shewana3_1733	(+)	(>)
94122.Shewana3_3599	+
94122.Shewana3_2510	+
94122.Shewana3_2517	+
94122.Shewana3_1031		(>)
94122.Shewana3_3910	+
94122.Shewana3_3913	+
94122.Shewana3_3777	+
94122.Shewana3_3773		+
94122.Shewana3_3778	+
94122.Shewana3_1749	+
94122.Shewana3_0584		+
94122.Shewana3_1852	+
94122.Shewana3_0146		(<)
94122.Shewana3_0413		(<)
94122.Shewana3_0076			+
94122.Shewana3_0072			+
94122.Shewana3_4008	+
94122.Shewana3_1942	+
94122.Shewana3_1989	+
94122.Shewana3_2749	+
94122.Shewana3_1720	+
94122.Shewana3_3589		(>)
94122.Shewana3_2365	+
94122.Shewana3_2368	+
94122.Shewana3_2253			+
94122.Shewana3_3167	+
94122.Shewana3_3160		(>)
94122.Shewana3_3010	+
94122.Shewana3_3013	+
94122.Shewana3_3521	+
94122.Shewana3_0661		(>)
94122.Shewana3_0599	+
94122.Shewana3_0065	+
94122.Shewana3_0068	(+)				(ER)
94122.Shewana3_1538	+
94122.Shewana3_1883	+
94122.Shewana3_0934	+
94122.Shewana3_1086	+
94122.Shewana3_1714			+
94122.Shewana3_3976	+
94122.Shewana3_3973	+
94122.Shewana3_2171	(+)				(plastid)
94122.Shewana3_2176			+
94122.Shewana3_2376			+
94122.Shewana3_2280		(>)
94122.Shewana3_2289	+
94122.Shewana3_3393			+
94122.Shewana3_3394	+
94122.Shewana3_1449			+
94122.Shewana3_3028		(>)
94122.Shewana3_2404	+
94122.Shewana3_2012	(+)	+
94122.Shewana3_0612	+
94122.Shewana3_2068	+
94122.Shewana3_0125	+
94122.Shewana3_0434			+
94122.Shewana3_1893	+
94122.Shewana3_1145	+
94122.Shewana3_2767	+
94122.Shewana3_2760	+
94122.Shewana3_3564			+
94122.Shewana3_3968	+
94122.Shewana3_3969	+
94122.Shewana3_3495	+
94122.Shewana3_3497		+
94122.Shewana3_2389	+
94122.Shewana3_3700			+
94122.Shewana3_2811	+
94122.Shewana3_2815	(+)				(plastid)
94122.Shewana3_2814			+
94122.Shewana3_0359	+
94122.Shewana3_2128	+
94122.Shewana3_1069		+
94122.Shewana3_2598	+
94122.Shewana3_2599	(+)				plastid
94122.Shewana3_3758			+
94122.Shewana3_0136	+
94122.Shewana3_1399	+
94122.Shewana3_0954		(>)
94122.Shewana3_0955	+
94122.Shewana3_1170	+
94122.Shewana3_2978	+
94122.Shewana3_1521	+
94122.Shewana3_2770	+
94122.Shewana3_2610	+
94122.Shewana3_1603			+
94122.Shewana3_2152			+
94122.Shewana3_1609	+
94122.Shewana3_2390	+
94122.Shewana3_2395		(>)
94122.Shewana3_2809	(+)				(plastid)
94122.Shewana3_0908	+
94122.Shewana3_0631	+
94122.Shewana3_2462		(>)
94122.Shewana3_0708	+
94122.Shewana3_0706	+
94122.Shewana3_0098	+
94122.Shewana3_0381	+
94122.Shewana3_0384	+
94122.Shewana3_1384		+
94122.Shewana3_1168	+
94122.Shewana3_2943	+
94122.Shewana3_0103	+
94122.Shewana3_1766		(>)
94122.Shewana3_2019		+
94122.Shewana3_2141			+
94122.Shewana3_2973			+
94122.Shewana3_1615	+
94122.Shewana3_1619	+
94122.Shewana3_2231	+
94122.Shewana3_2234	(+)				(mitochondrial)
94122.Shewana3_2383			+
94122.Shewana3_3612	+
94122.Shewana3_3365	+
94122.Shewana3_0714	(+)				(mitochondrial)
94122.Shewana3_1110	(+)				(mitochondrial)
94122.Shewana3_0397	+
94122.Shewana3_3228	(+)		+
94122.Shewana3_0398	+
94122.Shewana3_1282	+
94122.Shewana3_0974	+
94122.Shewana3_0973	+
94122.Shewana3_0970	(+)				(mitochondrial)
94122.Shewana3_1114	+
94122.Shewana3_1111			+
94122.Shewana3_1576	+
94122.Shewana3_1593	+
94122.Shewana3_1596	+
94122.Shewana3_1757		+
94122.Shewana3_2005	(+)				(ER)
94122.Shewana3_0306	+
94122.Shewana3_1625				PF01536
94122.Shewana3_1622			+
94122.Shewana3_2131			+
94122.Shewana3_3995	(+)				(ER)
94122.Shewana3_3449	(+)				(mitochondrial)
94122.Shewana3_3531		(>)
94122.Shewana3_2223	(+)				(mitochondrial)
94122.Shewana3_2987	+
94122.Shewana3_3284	+
94122.Shewana3_3286	+
94122.Shewana3_3266	+
94122.Shewana3_1964		(>)
94122.Shewana3_0401	+
94122.Shewana3_0369	+
94122.Shewana3_0367	+
94122.Shewana3_1363		(<)
94122.Shewana3_2565		(<)
94122.Shewana3_0989	+
94122.Shewana3_2924	+
94122.Shewana3_1581	+
94122.Shewana3_2032	(+)		+
94122.Shewana3_3459		+
94122.Shewana3_2856	+
94122.Shewana3_3856			+
94122.Shewana3_3438	+
94122.Shewana3_2976	+
94122.Shewana3_3271	+
94122.Shewana3_3275	+
94122.Shewana3_3278	+
94122.Shewana3_0778	+
94122.Shewana3_1912	+
94122.Shewana3_2656	+
94122.Shewana3_0176	+
94122.Shewana3_1829	+
94122.Shewana3_1822			+
94122.Shewana3_1827	+
94122.Shewana3_1824	+
94122.Shewana3_2932	+
94122.Shewana3_1002			+
94122.Shewana3_2447	(+)	(<)
94122.Shewana3_2842	+
94122.Shewana3_3861		(<)
94122.Shewana3_2209	+
94122.Shewana3_2207	+
94122.Shewana3_1755	+
94122.Shewana3_3242	+
94122.Shewana3_3089	+
94122.Shewana3_3648		(>)
94122.Shewana3_0347	+
94122.Shewana3_4060	+
94122.Shewana3_0524	+
94122.Shewana3_0529	+
94122.Shewana3_4121			+
94122.Shewana3_1951	+
94122.Shewana3_1344	+
94122.Shewana3_0839	+
94122.Shewana3_1010	+
94122.Shewana3_2475	+
94122.Shewana3_0893	(+)				(mitochondrial)
94122.Shewana3_3504			+
94122.Shewana3_2059	(+)				(mitochondrial)
94122.Shewana3_2439			+
94122.Shewana3_2876				(PF09127)
94122.Shewana3_3893		+
94122.Shewana3_3897			+
94122.Shewana3_3251		+
94122.Shewana3_1938			+
94122.Shewana3_1931	+
94122.Shewana3_1934	+
94122.Shewana3_1937	+
94122.Shewana3_1936	+
94122.Shewana3_2445			+
94122.Shewana3_0350	(+)	+
94122.Shewana3_0358		+
94122.Shewana3_1806				(PF08487)
94122.Shewana3_1246			+
94122.Shewana3_1336	+
94122.Shewana3_1798				(PF04970)
94122.Shewana3_1557	+
94122.Shewana3_0825	+
94122.Shewana3_1556	+
94122.Shewana3_0828	+
94122.Shewana3_0829	+
94122.Shewana3_2687		(>)
94122.Shewana3_1480	+
94122.Shewana3_2974	+
94122.Shewana3_2975		(>)
94122.Shewana3_2467	+
94122.Shewana3_2465		+
94122.Shewana3_2986	+
94122.Shewana3_2268	(+)				(ER)
94122.Shewana3_2260	(+)		+
94122.Shewana3_3311	+
94122.Shewana3_3316	+
94122.Shewana3_3400	+
94122.Shewana3_0697			+
94122.Shewana3_2310	+
94122.Shewana3_1923			+
94122.Shewana3_1920	+
94122.Shewana3_0323		(<)
94122.Shewana3_0328	+
94122.Shewana3_1817	+
94122.Shewana3_4042	+
94122.Shewana3_1253	+
94122.Shewana3_1257	+
94122.Shewana3_1323	+
94122.Shewana3_0256	+
94122.Shewana3_0814	+
94122.Shewana3_1075		(>)
94122.Shewana3_4106	+
94122.Shewana3_1473	+
94122.Shewana3_1673	+
94122.Shewana3_1670	+
94122.Shewana3_1784				(PF02460)
94122.Shewana3_2075	+
94122.Shewana3_2899		+
94122.Shewana3_2255	(+)				(mitochondrial)
94122.Shewana3_3780			+
94122.Shewana3_3234	+
94122.Shewana3_3232	+
94122.Shewana3_3824	+
94122.Shewana3_3125	(+)				(ER)
94122.Shewana3_2566	(+)				(plastid)
94122.Shewana3_1224	+
94122.Shewana3_0335	+
94122.Shewana3_4035	+
94122.Shewana3_1804	+
94122.Shewana3_1266	+
94122.Shewana3_0808	+
94122.Shewana3_2668		(>)
94122.Shewana3_2758	+
94122.Shewana3_2794	+
94122.Shewana3_2795	+
94122.Shewana3_1682	+
94122.Shewana3_2407				(PF02225)
94122.Shewana3_1047	+
94122.Shewana3_2244	+
94122.Shewana3_1355		(>)
94122.Shewana3_2990			+
94122.Shewana3_3936		(>)
94122.Shewana3_3759	+
94122.Shewana3_2038	+
94122.Shewana3_2331				(PF05706)
94122.Shewana3_3687		(>)
94122.Shewana3_3111	+
94122.Shewana3_4136		+
94122.Shewana3_0498	+
94122.Shewana3_4013	+
94122.Shewana3_1870		(<)
94122.Shewana3_1873	+
94122.Shewana3_0017	(+)		+
94122.Shewana3_4131		(<)
94122.Shewana3_0274		+
94122.Shewana3_0878	+
94122.Shewana3_0875	(+)				(plastid)
94122.Shewana3_3432	+
94122.Shewana3_2345	+
94122.Shewana3_1996	+
94122.Shewana3_3320	+
94122.Shewana3_0166			+
94122.Shewana3_3325	+
94122.Shewana3_4021			+
94122.Shewana3_3431	+
94122.Shewana3_3105			+
94122.Shewana3_3339	+
94122.Shewana3_0459			+
94122.Shewana3_3805	+
94122.Shewana3_4123			+
94122.Shewana3_0319	+
94122.Shewana3_1845	+
94122.Shewana3_1847	+
94122.Shewana3_4010	+
94122.Shewana3_1999	+
94122.Shewana3_1994	+
94122.Shewana3_1520	+
94122.Shewana3_0866	+
94122.Shewana3_1517	+
94122.Shewana3_1515	+
94122.Shewana3_3622	(+)	(<)
94122.Shewana3_1209	(+)	+
94122.Shewana3_2426	(+)
94122.Shewana3_3911	(+)
94122.Shewana3_3356	(+)
94122.Shewana3_3359	(+)
94122.Shewana3_1403	(+)
94122.Shewana3_0451	(+)
94122.Shewana3_0298	(+)
94122.Shewana3_2107	(+)
94122.Shewana3_0857	(+)
94122.Shewana3_0858	(+)
94122.Shewana3_1181	(+)
94122.Shewana3_0929	(+)
94122.Shewana3_2638	(+)
94122.Shewana3_2160	(+)
94122.Shewana3_2369	(+)
94122.Shewana3_3347	(+)
94122.Shewana3_0245	(+)
94122.Shewana3_3011	(+)
94122.Shewana3_0060	(+)
94122.Shewana3_0061	(+)
94122.Shewana3_2670	(+)
94122.Shewana3_0111	(+)
94122.Shewana3_0840	(+)
94122.Shewana3_1536	(+)
94122.Shewana3_1159	(+)
94122.Shewana3_2629	(+)
94122.Shewana3_1710	(+)
94122.Shewana3_3578	(+)
94122.Shewana3_3804	(+)
94122.Shewana3_3151	(+)
94122.Shewana3_3627	(+)
94122.Shewana3_0053	(+)
94122.Shewana3_0057	(+)
94122.Shewana3_3021	(+)
94122.Shewana3_0438	(+)
94122.Shewana3_4117	(+)
94122.Shewana3_3499	(+)
94122.Shewana3_3493	(+)
94122.Shewana3_3704	(+)
94122.Shewana3_3546	(+)
94122.Shewana3_3702	(+)
94122.Shewana3_3638	(+)
94122.Shewana3_1892	(+)
94122.Shewana3_0045	(+)
94122.Shewana3_0042	(+)
94122.Shewana3_0043	(+)
94122.Shewana3_1953	(+)
94122.Shewana3_0550	(+)
94122.Shewana3_2768	(+)
94122.Shewana3_0950	(+)
94122.Shewana3_2979	(+)
94122.Shewana3_1552	(+)
94122.Shewana3_1602	(+)
94122.Shewana3_1607	(+)
94122.Shewana3_3602	(+)
94122.Shewana3_0079	(+)
94122.Shewana3_0414	(+)
94122.Shewana3_0149	(+)
94122.Shewana3_1388	(+)
94122.Shewana3_2942	(+)
94122.Shewana3_2574	(+)
94122.Shewana3_0143	(+)
94122.Shewana3_2707	(+)
94122.Shewana3_2702	(+)
94122.Shewana3_2839	(+)
94122.Shewana3_3834	(+)
94122.Shewana3_2230	(+)
94122.Shewana3_2237	(+)
94122.Shewana3_2238	(+)
94122.Shewana3_3617	(+)
94122.Shewana3_0082	(+)
94122.Shewana3_0085	(+)
94122.Shewana3_0393	(+)
94122.Shewana3_3223	(+)
94122.Shewana3_1289	(+)
94122.Shewana3_1579	(+)
94122.Shewana3_1592	(+)
94122.Shewana3_2712	(+)
94122.Shewana3_2134	(+)
94122.Shewana3_2136	(+)
94122.Shewana3_3537	(+)
94122.Shewana3_2821	(+)
94122.Shewana3_2826	(+)
94122.Shewana3_2224	(+)
94122.Shewana3_3280	(+)
94122.Shewana3_3263	(+)
94122.Shewana3_3066	(+)
94122.Shewana3_1968	(+)
94122.Shewana3_2563	(+)
94122.Shewana3_4088	(+)
94122.Shewana3_1297	(+)
94122.Shewana3_0213	(+)
94122.Shewana3_1566	(+)
94122.Shewana3_1561	(+)
94122.Shewana3_1035	(+)
94122.Shewana3_2031	(+)
94122.Shewana3_3986	(+)
94122.Shewana3_3524	(+)
94122.Shewana3_0770	(+)
94122.Shewana3_1913	(+)
94122.Shewana3_1911	(+)
94122.Shewana3_1910	(+)
94122.Shewana3_1825	(+)
94122.Shewana3_0205	(+)
94122.Shewana3_2939	(+)
94122.Shewana3_1838	(+)
94122.Shewana3_1005	(+)
94122.Shewana3_2734	(+)
94122.Shewana3_2732	(+)
94122.Shewana3_3465	(+)
94122.Shewana3_3462	(+)
94122.Shewana3_3515	(+)
94122.Shewana3_2843	(+)
94122.Shewana3_2596	(+)
94122.Shewana3_3246	(+)
94122.Shewana3_1146	(+)
94122.Shewana3_2112	(+)
94122.Shewana3_0745	(+)
94122.Shewana3_0525	(+)
94122.Shewana3_1950	(+)
94122.Shewana3_2901	+
94122.Shewana3_2903	(+)
94122.Shewana3_4126	(+)
94122.Shewana3_2907	(+)
94122.Shewana3_0832	(+)
94122.Shewana3_2694	(+)
94122.Shewana3_1654	(+)
94122.Shewana3_1945	(+)
94122.Shewana3_3650	(+)
94122.Shewana3_3659	(+)
94122.Shewana3_1308	(+)
94122.Shewana3_0756	(+)
94122.Shewana3_1932	(+)
94122.Shewana3_1935	(+)
94122.Shewana3_0517	(+)
94122.Shewana3_3661	(+)
94122.Shewana3_1249	(+)
94122.Shewana3_1339	(+)
94122.Shewana3_2919	(+)
94122.Shewana3_1799	(+)
94122.Shewana3_2608	(+)
94122.Shewana3_1465	(+)
94122.Shewana3_1469	(+)
94122.Shewana3_1795	(+)
94122.Shewana3_2041	(+)
94122.Shewana3_3793	(+)
94122.Shewana3_3790	(+)
94122.Shewana3_2786	(+)
94122.Shewana3_3134	(+)
94122.Shewana3_1925	(+)
94122.Shewana3_0322	(+)
94122.Shewana3_0329	(+)
94122.Shewana3_1811	(+)
94122.Shewana3_1324	(+)
94122.Shewana3_1326	(+)
94122.Shewana3_0255	(+)
94122.Shewana3_0251	(+)
94122.Shewana3_0810	(+)
94122.Shewana3_1496	(+)
94122.Shewana3_2072	(+)
94122.Shewana3_2090	(+)
94122.Shewana3_2524	(+)
94122.Shewana3_3306	(+)
94122.Shewana3_3781	(+)
94122.Shewana3_2553	(+)
94122.Shewana3_0578	(+)
94122.Shewana3_3122	(+)
94122.Shewana3_0338	(+)
94122.Shewana3_0800	(+)
94122.Shewana3_0315	(+)
94122.Shewana3_0581	(+)
94122.Shewana3_2793	(+)
94122.Shewana3_2752	(+)
94122.Shewana3_1049	(+)
94122.Shewana3_2242	(+)
94122.Shewana3_3200	(+)
94122.Shewana3_3209	(+)
94122.Shewana3_0962	(+)
94122.Shewana3_2612	(+)
94122.Shewana3_0497	(+)
94122.Shewana3_3422	(+)
94122.Shewana3_1871	(+)
94122.Shewana3_2571	(+)
94122.Shewana3_4020	(+)
94122.Shewana3_2572	(+)
94122.Shewana3_1301	(+)
94122.Shewana3_4009	(+)
94122.Shewana3_1457	(+)
94122.Shewana3_2505	(+)
94122.Shewana3_2500	(+)
94122.Shewana3_2508	(+)
94122.Shewana3_3327	(+)
94122.Shewana3_3106	(+)
94122.Shewana3_3107	(+)
94122.Shewana3_2379	(+)
94122.Shewana3_0984	(+)
94122.Shewana3_0987	(+)
94122.Shewana3_0648	(+)
94122.Shewana3_0649	(+)
94122.Shewana3_0004	(+)
94122.Shewana3_4011	(+)
94122.Shewana3_0009	(+)
94122.Shewana3_1523	(+)
94122.Shewana3_1511	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 0.5 (5/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.6 (6/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================