Metamenu

Effective results for Lactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM 20001 (eggnog40)

Summary

Number of putative secreted proteins: 31
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 31 proteins (1 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
913848.LcorcK3_010100009821(PF00288)(mitochondrial)
913848.LcorcK3_010100000290(PF01131)(mitochondrial)
913848.LcorcK3_010100009771(PF03577)(plastid)
913848.LcorcK3_010100008102(PF01501)(plastid)
913848.LcorcK3_010100013483(PF01969)(mitochondrial)
913848.LcorcK3_010100008864(PF01121)not used
913848.LcorcK3_010100008869(PF01121)not used
913848.LcorcK3_010100009816(PF00288)
913848.LcorcK3_010100009826(PF00288)
913848.LcorcK3_010100008157(PF02882)
913848.LcorcK3_010100001722(PF00288)
913848.LcorcK3_010100005603(PF01131)
913848.LcorcK3_010100005468(PF01131)
913848.LcorcK3_010100009194(PF02882)
913848.LcorcK3_010100009199(PF02882)
913848.LcorcK3_010100009991(PF03577)
913848.LcorcK3_010100004583(PF01501)
913848.LcorcK3_010100005098(PF00288)
913848.LcorcK3_010100003816(PF01131)
913848.LcorcK3_010100001222(PF00288)
913848.LcorcK3_010100002142(PF00288)
913848.LcorcK3_010100005333PF02037
913848.LcorcK3_010100006657(PF05495)
913848.LcorcK3_010100001142(PF00288)
913848.LcorcK3_010100002492(PF03577)
913848.LcorcK3_010100005975(PF02403)
913848.LcorcK3_010100013488(PF01969)
913848.LcorcK3_010100001482(PF02403)
913848.LcorcK3_010100010166(PF01131)
913848.LcorcK3_010100008047(PF01501)
913848.LcorcK3_010100005553(PF01131)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================