Effective results for Prevotella dentalis DSM 3688 (eggnog40)

Summary

Number of putative secreted proteins: 81
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 81 proteins (17 high, 64 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
908937.HMPREF9136_1595(PF00295)ER
908937.HMPREF9136_2342(PF01715)(ER)
908937.HMPREF9136_1139(PF13905)ER
908937.HMPREF9136_2018(PF08531)ER
908937.HMPREF9136_1477(PF08531)ER
908937.HMPREF9136_0891PF02469(mitochondrial)
908937.HMPREF9136_0890PF02469ER
908937.HMPREF9136_0899(PF07944)ER
908937.HMPREF9136_1917(PF06964)ER
908937.HMPREF9136_2255(PF00295)ER
908937.HMPREF9136_1679(PF06964)ER
908937.HMPREF9136_1417(PF13905)(mitochondrial); plastid
908937.HMPREF9136_0930(PF07971)ER
908937.HMPREF9136_1651PF02469ER
908937.HMPREF9136_0927(PF07971)ER
908937.HMPREF9136_1647PF02469(ER)
908937.HMPREF9136_0919(PF03644)ER
908937.HMPREF9136_0916(PF03644)(ER)
908937.HMPREF9136_1555(PF07971)ER
908937.HMPREF9136_1188(PF08531)ER
908937.HMPREF9136_1365(PF06964)ER
908937.HMPREF9136_1366PF02469ER
908937.HMPREF9136_1369PF02469ER
908937.HMPREF9136_0900(PF15979)ER
908937.HMPREF9136_2220(PF13905)ER
908937.HMPREF9136_1287(PF05686)mitochondrial; (mitochondrial)
908937.HMPREF9136_0378(PF08531)ER
908937.HMPREF9136_0377(PF13905)ER
908937.HMPREF9136_1370PF02469ER
908937.HMPREF9136_2238PF02469ER
908937.HMPREF9136_2237PF02469ER
908937.HMPREF9136_1762(PF00295)ER
908937.HMPREF9136_2242(PF09820)(mitochondrial)
908937.HMPREF9136_2173(PF00295)ER
908937.HMPREF9136_0061(PF07944)ER
908937.HMPREF9136_1955PF02469(mitochondrial)
908937.HMPREF9136_1951PF02469ER
908937.HMPREF9136_1950PF02469ER
908937.HMPREF9136_2305(PF05704)(mitochondrial)
908937.HMPREF9136_1108(PF13905)ER
908937.HMPREF9136_1552(PF00295)ER
908937.HMPREF9136_2106(PF07168)ER
908937.HMPREF9136_1857(PF13905)ER
908937.HMPREF9136_0675(PF06964)ER
908937.HMPREF9136_1026(PF06964)ER
908937.HMPREF9136_1938(PF15979)(ER)
908937.HMPREF9136_2134(PF00686)(mitochondrial)
908937.HMPREF9136_1557(PF07971)(mitochondrial)
908937.HMPREF9136_0772(PF13155) (PF01807)
908937.HMPREF9136_1163(PF08531)(mitochondrial)
908937.HMPREF9136_1987(PF13155) (PF01807)
908937.HMPREF9136_0902(PF07944)(ER)
908937.HMPREF9136_0375(PF13905)(ER)
908937.HMPREF9136_1580(PF13155) (PF01807)
908937.HMPREF9136_1447PF13151
908937.HMPREF9136_1448PF13151
908937.HMPREF9136_1470(PF09820)
908937.HMPREF9136_2243(PF09820)not used
908937.HMPREF9136_1260(PF13155)
908937.HMPREF9136_1860(PF15979)
908937.HMPREF9136_0796(PF13155)
908937.HMPREF9136_1469(PF09820)
908937.HMPREF9136_1659PF07959
908937.HMPREF9136_1656(PF07944)
908937.HMPREF9136_1657(PF07944)
908937.HMPREF9136_2517(PF03630)
908937.HMPREF9136_2405(PF09820)not used
908937.HMPREF9136_2406(PF09820)
908937.HMPREF9136_0979(PF00686)
908937.HMPREF9136_0384(PF05693)
908937.HMPREF9136_0382(PF15979)
908937.HMPREF9136_1963(PF16011)
908937.HMPREF9136_2606(PF01807)
908937.HMPREF9136_0209(PF01715)
908937.HMPREF9136_1805(PF07971)
908937.HMPREF9136_1804(PF07971)
908937.HMPREF9136_1706(PF16314)
908937.HMPREF9136_2595PF13151
908937.HMPREF9136_2620(PF13155)
908937.HMPREF9136_0779(PF02689)
908937.HMPREF9136_1954PF02469

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================