Effective results for Prevotella dentalis DSM 3688 (eggnog40)

Summary

Number of putative secreted proteins: 81
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 81 proteins (17 high, 64 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
908937.HMPREF9136_1595				(PF00295)	ER
908937.HMPREF9136_2342				(PF01715)	(ER)
908937.HMPREF9136_1139				(PF13905)	ER
908937.HMPREF9136_2018				(PF08531)	ER
908937.HMPREF9136_1477				(PF08531)	ER
908937.HMPREF9136_0891				PF02469	(mitochondrial)
908937.HMPREF9136_0890				PF02469	ER
908937.HMPREF9136_0899				(PF07944)	ER
908937.HMPREF9136_1917				(PF06964)	ER
908937.HMPREF9136_2255				(PF00295)	ER
908937.HMPREF9136_1679				(PF06964)	ER
908937.HMPREF9136_1417				(PF13905)	(mitochondrial); plastid
908937.HMPREF9136_0930				(PF07971)	ER
908937.HMPREF9136_1651				PF02469	ER
908937.HMPREF9136_0927				(PF07971)	ER
908937.HMPREF9136_1647				PF02469	(ER)
908937.HMPREF9136_0919				(PF03644)	ER
908937.HMPREF9136_0916				(PF03644)	(ER)
908937.HMPREF9136_1555				(PF07971)	ER
908937.HMPREF9136_1188				(PF08531)	ER
908937.HMPREF9136_1365				(PF06964)	ER
908937.HMPREF9136_1366				PF02469	ER
908937.HMPREF9136_1369				PF02469	ER
908937.HMPREF9136_0900				(PF15979)	ER
908937.HMPREF9136_2220				(PF13905)	ER
908937.HMPREF9136_1287				(PF05686)	mitochondrial; (mitochondrial)
908937.HMPREF9136_0378				(PF08531)	ER
908937.HMPREF9136_0377				(PF13905)	ER
908937.HMPREF9136_1370				PF02469	ER
908937.HMPREF9136_2238				PF02469	ER
908937.HMPREF9136_2237				PF02469	ER
908937.HMPREF9136_1762				(PF00295)	ER
908937.HMPREF9136_2242				(PF09820)	(mitochondrial)
908937.HMPREF9136_2173				(PF00295)	ER
908937.HMPREF9136_0061				(PF07944)	ER
908937.HMPREF9136_1955				PF02469	(mitochondrial)
908937.HMPREF9136_1951				PF02469	ER
908937.HMPREF9136_1950				PF02469	ER
908937.HMPREF9136_2305				(PF05704)	(mitochondrial)
908937.HMPREF9136_1108				(PF13905)	ER
908937.HMPREF9136_1552				(PF00295)	ER
908937.HMPREF9136_2106				(PF07168)	ER
908937.HMPREF9136_1857				(PF13905)	ER
908937.HMPREF9136_0675				(PF06964)	ER
908937.HMPREF9136_1026				(PF06964)	ER
908937.HMPREF9136_1938				(PF15979)	(ER)
908937.HMPREF9136_2134				(PF00686)	(mitochondrial)
908937.HMPREF9136_1557				(PF07971)	(mitochondrial)
908937.HMPREF9136_0772				(PF13155) (PF01807)
908937.HMPREF9136_1163				(PF08531)	(mitochondrial)
908937.HMPREF9136_1987				(PF13155) (PF01807)
908937.HMPREF9136_0902				(PF07944)	(ER)
908937.HMPREF9136_0375				(PF13905)	(ER)
908937.HMPREF9136_1580				(PF13155) (PF01807)
908937.HMPREF9136_1447				PF13151
908937.HMPREF9136_1448				PF13151
908937.HMPREF9136_1470				(PF09820)
908937.HMPREF9136_2243				(PF09820)	not used
908937.HMPREF9136_1260				(PF13155)
908937.HMPREF9136_1860				(PF15979)
908937.HMPREF9136_0796				(PF13155)
908937.HMPREF9136_1469				(PF09820)
908937.HMPREF9136_1659				PF07959
908937.HMPREF9136_1656				(PF07944)
908937.HMPREF9136_1657				(PF07944)
908937.HMPREF9136_2517				(PF03630)
908937.HMPREF9136_2405				(PF09820)	not used
908937.HMPREF9136_2406				(PF09820)
908937.HMPREF9136_0979				(PF00686)
908937.HMPREF9136_0384				(PF05693)
908937.HMPREF9136_0382				(PF15979)
908937.HMPREF9136_1963				(PF16011)
908937.HMPREF9136_2606				(PF01807)
908937.HMPREF9136_0209				(PF01715)
908937.HMPREF9136_1805				(PF07971)
908937.HMPREF9136_1804				(PF07971)
908937.HMPREF9136_1706				(PF16314)
908937.HMPREF9136_2595				PF13151
908937.HMPREF9136_2620				(PF13155)
908937.HMPREF9136_0779				(PF02689)
908937.HMPREF9136_1954				PF02469

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================