Effective results for Alistipes sp. HGB5 (eggnog40)

Summary

Number of putative secreted proteins: 84
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 84 proteins (29 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
908612.HMPREF9720_0440				(PF02838) (PF00728) (PF13290)	ER
908612.HMPREF9720_0247				(PF02838) (PF00728) (PF13290)	ER
908612.HMPREF9720_1447				(PF02838) (PF13287) (PF00728)	ER
908612.HMPREF9720_0533				PF07971 (PF13290)	ER
908612.HMPREF9720_1313				(PF02971) (PF07837)	(mitochondrial)
908612.HMPREF9720_2374				(PF02838) (PF00728)	ER
908612.HMPREF9720_0830				(PF16387) (PF03009)	ER
908612.HMPREF9720_2301				PF07971 (PF06824)	ER
908612.HMPREF9720_0229				(PF02838) (PF00728) (PF13290)	(ER)
908612.HMPREF9720_0244				(PF02838) (PF00728)	ER
908612.HMPREF9720_0539				(PF02838) (PF00728)	ER
908612.HMPREF9720_3010				(PF02838) (PF00728) (PF13290)	(plastid)
908612.HMPREF9720_1835				(PF16387) (PF03009)	ER
908612.HMPREF9720_2229				(PF02838) (PF00728)	(ER)
908612.HMPREF9720_0032				PF07971	ER
908612.HMPREF9720_0145				(PF05096)	ER
908612.HMPREF9720_1252				(PF07168)	ER
908612.HMPREF9720_2300				PF07971	ER
908612.HMPREF9720_0790				PF02265	ER
908612.HMPREF9720_0829				PF02265	ER
908612.HMPREF9720_0559				PF02265	ER
908612.HMPREF9720_2503				PF13155	(mitochondrial)
908612.HMPREF9720_1736				(PF05096)	ER
908612.HMPREF9720_0343				(PF03009)	ER
908612.HMPREF9720_0909				(PF03009)	ER
908612.HMPREF9720_0750				(PF16401)	ER
908612.HMPREF9720_0137				(PF06824)	(ER)
908612.HMPREF9720_0136				(PF03663)	ER
908612.HMPREF9720_2283				(PF03009)	ER
908612.HMPREF9720_2663				PF02265	ER
908612.HMPREF9720_1522				(PF03009)	ER
908612.HMPREF9720_1521				(PF03009)	ER
908612.HMPREF9720_0438				PF07971	(mitochondrial)
908612.HMPREF9720_2276				(PF03009)	ER
908612.HMPREF9720_1671				PF02265	ER
908612.HMPREF9720_2131				(PF03432)	mitochondrial; (mitochondrial)
908612.HMPREF9720_2013				(PF13290)	ER
908612.HMPREF9720_1113				(PF02544)	ER
908612.HMPREF9720_0087				PF07971	ER
908612.HMPREF9720_2835				(PF02838)	ER
908612.HMPREF9720_2836				PF07971	ER
908612.HMPREF9720_2833				PF07971	ER
908612.HMPREF9720_2900				(PF03009)	ER
908612.HMPREF9720_0321				(PF01807) PF13155
908612.HMPREF9720_1031				(PF01807) PF13155
908612.HMPREF9720_0243				(PF16401)	(ER)
908612.HMPREF9720_2086				(PF01807) PF13155
908612.HMPREF9720_2886				(PF01807) PF13155
908612.HMPREF9720_2451				(PF01807) PF13155
908612.HMPREF9720_0132				(PF03663)	(ER)
908612.HMPREF9720_0983				(PF13287) (PF00728)	not used
908612.HMPREF9720_0413				(PF02838) (PF00728)
908612.HMPREF9720_0084				PF07971 (PF14683)
908612.HMPREF9720_1832				(PF03009)	(ER)
908612.HMPREF9720_0151				(PF05693)
908612.HMPREF9720_0301				PF07971
908612.HMPREF9720_0944				(PF16314)
908612.HMPREF9720_2126				PF13155
908612.HMPREF9720_2635				(PF13320)
908612.HMPREF9720_1680				PF13155
908612.HMPREF9720_1375				(PF13320)
908612.HMPREF9720_2084				(PF03432)
908612.HMPREF9720_3048				(PF02446)	not used
908612.HMPREF9720_3046				(PF03432)
908612.HMPREF9720_3045				PF07971	not used
908612.HMPREF9720_0366				(PF03432)
908612.HMPREF9720_0364				PF13155
908612.HMPREF9720_1366				PF07971
908612.HMPREF9720_0298				(PF03432)
908612.HMPREF9720_0292				(PF01348)
908612.HMPREF9720_3052				PF07971
908612.HMPREF9720_2071				(PF02446)	not used
908612.HMPREF9720_0354				(PF16011)
908612.HMPREF9720_1715				PF13155
908612.HMPREF9720_2441				(PF16401)
908612.HMPREF9720_2501				(PF03432)
908612.HMPREF9720_2869				(PF03432)
908612.HMPREF9720_0277				(PF03432)
908612.HMPREF9720_2647				(PF01348)
908612.HMPREF9720_2649				(PF03432)
908612.HMPREF9720_2800				(PF02446)	not used
908612.HMPREF9720_2939				(PF08707)
908612.HMPREF9720_2834				PF07971
908612.HMPREF9720_1905				(PF08707)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================