Metamenu

Effective results for Clostridium sp. HGF2 (eggnog40)

Summary

Number of putative secreted proteins: 326
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 43 eukaryotic-like domains, contained in 326 proteins (102 high, 224 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
908340.HMPREF9406_2442PF08011 PF09820mitochondrial
908340.HMPREF9406_0284(PF08125) (PF01232)(mitochondrial)
908340.HMPREF9406_0418(PF08279)(mitochondrial)
908340.HMPREF9406_0092PF00359 (PF08279)(mitochondrial)
908340.HMPREF9406_2483(PF01381)(mitochondrial)
908340.HMPREF9406_1775(PF01554)ER
908340.HMPREF9406_0310(PF08125) (PF01232)(mitochondrial)
908340.HMPREF9406_2835(PF08279)(mitochondrial); (ER)
908340.HMPREF9406_2632(PF01381)mitochondrial
908340.HMPREF9406_2493(PF01554)ER; (ER)
908340.HMPREF9406_2309(PF01232)(mitochondrial)
908340.HMPREF9406_0055PF00359 (PF08279)(mitochondrial)
908340.HMPREF9406_0930(PF01554)(ER)
908340.HMPREF9406_1183(PF01381)mitochondrial; (mitochondrial)
908340.HMPREF9406_0102(PF08279)(mitochondrial)
908340.HMPREF9406_3021(PF05935)mitochondrial
908340.HMPREF9406_2221(PF05738)ER
908340.HMPREF9406_4163(PF01554)(ER)
908340.HMPREF9406_2237(PF02421)(mitochondrial)
908340.HMPREF9406_0019(PF06445)mitochondrial
908340.HMPREF9406_3752(PF16403)ER
908340.HMPREF9406_2408(PF05738)ER
908340.HMPREF9406_1289(PF08282)ER
908340.HMPREF9406_4038(PF01554)ER
908340.HMPREF9406_0805(PF05738)ER
908340.HMPREF9406_1061(PF05738)ER
908340.HMPREF9406_1398(PF14526)(mitochondrial)
908340.HMPREF9406_3386(PF01381)(mitochondrial)
908340.HMPREF9406_1120(PF01554)ER
908340.HMPREF9406_0635(PF11074)(mitochondrial)
908340.HMPREF9406_0636(PF08279)(mitochondrial); mitochondrial
908340.HMPREF9406_4296(PF01381)mitochondrial; (mitochondrial)
908340.HMPREF9406_0772(PF01381)(mitochondrial)
908340.HMPREF9406_0773(PF16403)(ER); ER
908340.HMPREF9406_2701(PF08282)ER
908340.HMPREF9406_3500(PF16403)ER
908340.HMPREF9406_2903(PF01554)ER
908340.HMPREF9406_0509(PF16403)ER
908340.HMPREF9406_2113(PF01554)(ER)
908340.HMPREF9406_3510(PF08279)(mitochondrial)
908340.HMPREF9406_4098(PF01554)ER
908340.HMPREF9406_0430(PF01554)ER; (ER)
908340.HMPREF9406_3674(PF01554)ER
908340.HMPREF9406_2859(PF11070)ER
908340.HMPREF9406_0285(PF08125) (PF01232)(mitochondrial)
908340.HMPREF9406_1304PF09820mitochondrial
908340.HMPREF9406_0365(PF01554)(ER)
908340.HMPREF9406_3191(PF01228) (PF02901)
908340.HMPREF9406_2558(PF00847)(mitochondrial)
908340.HMPREF9406_3836PF08011 PF09820
908340.HMPREF9406_4205PF00359 (PF08279)
908340.HMPREF9406_4200PF00359 (PF08279)
908340.HMPREF9406_0058PF09820(mitochondrial)
908340.HMPREF9406_1335(PF01381)(mitochondrial)
908340.HMPREF9406_0207PF00359(mitochondrial)
908340.HMPREF9406_0060PF09820(ER)
908340.HMPREF9406_3140PF00359 (PF08279)
908340.HMPREF9406_3766PF00359 (PF08279)
908340.HMPREF9406_4004PF00834(ER)
908340.HMPREF9406_3803(PF01228) (PF02901)
908340.HMPREF9406_3570PF08011 PF09820
908340.HMPREF9406_1847PF00359 (PF08279)
908340.HMPREF9406_2188(PF01228) (PF02901)
908340.HMPREF9406_2342PF00359 (PF08279)
908340.HMPREF9406_3354(PF01228) (PF02901)
908340.HMPREF9406_4148(PF08125) (PF01232)
908340.HMPREF9406_0249PF00359 (PF08279)
908340.HMPREF9406_4037PF00359 (PF08279)
908340.HMPREF9406_4031(PF08125) (PF01232)
908340.HMPREF9406_0037PF00359 (PF08279)
908340.HMPREF9406_2643PF00359 (PF08279)
908340.HMPREF9406_2880PF00359 (PF08279)
908340.HMPREF9406_2890(PF08279)(mitochondrial)
908340.HMPREF9406_3385(PF01381)(mitochondrial)
908340.HMPREF9406_1728PF00359 (PF08279)
908340.HMPREF9406_1737PF00359 (PF08279)
908340.HMPREF9406_3479(PF01228) (PF02901)
908340.HMPREF9406_4112PF08011 PF09820
908340.HMPREF9406_1031(PF01381)(ER)
908340.HMPREF9406_3081PF00359 (PF08279)
908340.HMPREF9406_1021PF00359 (PF08279)
908340.HMPREF9406_3079PF01116(mitochondrial)
908340.HMPREF9406_3456PF00359 (PF08279)
908340.HMPREF9406_3450(PF01228) (PF02901)
908340.HMPREF9406_2103PF08011 PF09820
908340.HMPREF9406_0362PF00359 (PF08279)
908340.HMPREF9406_1786(PF02733)
908340.HMPREF9406_1787(PF02734)
908340.HMPREF9406_1785PF00359
908340.HMPREF9406_1782(PF02733)
908340.HMPREF9406_1781(PF02734)
908340.HMPREF9406_0414(PF01381)
908340.HMPREF9406_0566PF01116
908340.HMPREF9406_0569(PF02734)
908340.HMPREF9406_0091(PF01784)
908340.HMPREF9406_0095(PF00232)
908340.HMPREF9406_3997(PF08279)
908340.HMPREF9406_3999PF00834
908340.HMPREF9406_3220(PF08282)
908340.HMPREF9406_3063(PF01381)
908340.HMPREF9406_0787(PF01381)
908340.HMPREF9406_3209(PF08282)
908340.HMPREF9406_3200PF00359
908340.HMPREF9406_3204(PF00232)
908340.HMPREF9406_3663PF01116
908340.HMPREF9406_4239(PF00232)
908340.HMPREF9406_4233PF01116
908340.HMPREF9406_4232PF01116
908340.HMPREF9406_4237PF00359
908340.HMPREF9406_4236PF00359
908340.HMPREF9406_1777(PF08282)
908340.HMPREF9406_0311(PF01081)
908340.HMPREF9406_0319(PF01182)
908340.HMPREF9406_1791PF00359
908340.HMPREF9406_0429(PF00958)
908340.HMPREF9406_1407(PF00958)
908340.HMPREF9406_0422(PF00232)
908340.HMPREF9406_0424(PF01081)
908340.HMPREF9406_0554(PF02421)
908340.HMPREF9406_0044PF00359
908340.HMPREF9406_0045PF01116
908340.HMPREF9406_0041PF00359
908340.HMPREF9406_0048PF00359
908340.HMPREF9406_3832(PF01381)
908340.HMPREF9406_2836(PF06445)
908340.HMPREF9406_2838(PF14526)
908340.HMPREF9406_3307PF00834
908340.HMPREF9406_2634(PF00232)
908340.HMPREF9406_2547(PF08282)
908340.HMPREF9406_2494(PF00232)
908340.HMPREF9406_2301(PF02421)
908340.HMPREF9406_4201(PF00232)
908340.HMPREF9406_1147(PF01381)
908340.HMPREF9406_0301PF01116
908340.HMPREF9406_0309(PF08125)
908340.HMPREF9406_1324(PF08282)
908340.HMPREF9406_1325(PF01182)
908340.HMPREF9406_1322(PF08282)
908340.HMPREF9406_0057PF08011
908340.HMPREF9406_0051(PF00232)
908340.HMPREF9406_0059PF09820
908340.HMPREF9406_0434(PF01554)
908340.HMPREF9406_3045(PF08279)
908340.HMPREF9406_3044PF00359
908340.HMPREF9406_3043(PF00232)
908340.HMPREF9406_3041PF01116
908340.HMPREF9406_1849PF01116
908340.HMPREF9406_3318(PF06445)
908340.HMPREF9406_3317(PF14526)
908340.HMPREF9406_2154(PF02421)
908340.HMPREF9406_2373(PF00215)
908340.HMPREF9406_2374(PF01182)
908340.HMPREF9406_2200(PF00215)
908340.HMPREF9406_1420(PF00232)
908340.HMPREF9406_0205PF00359
908340.HMPREF9406_0206PF00359
908340.HMPREF9406_0442(PF00232)
908340.HMPREF9406_3036PF00834
908340.HMPREF9406_2815(PF01081)
908340.HMPREF9406_1722(PF00232)
908340.HMPREF9406_2215(PF03437)
908340.HMPREF9406_1180(PF01381)
908340.HMPREF9406_4174PF00359
908340.HMPREF9406_0101PF00359
908340.HMPREF9406_0104(PF01554)
908340.HMPREF9406_3025(PF04794)
908340.HMPREF9406_3375(PF01991)
908340.HMPREF9406_2771(PF14526)not used
908340.HMPREF9406_3978(PF01081)
908340.HMPREF9406_3974(PF01381)
908340.HMPREF9406_3487(PF01381)
908340.HMPREF9406_2178(PF02873)
908340.HMPREF9406_2428(PF00232)
908340.HMPREF9406_2429(PF00232)
908340.HMPREF9406_1199(PF13597)
908340.HMPREF9406_4167(PF01081)
908340.HMPREF9406_4166PF00359
908340.HMPREF9406_0668(PF08282)
908340.HMPREF9406_0669(PF06445)
908340.HMPREF9406_0665(PF08282)
908340.HMPREF9406_4011(PF01554)
908340.HMPREF9406_1846PF00359
908340.HMPREF9406_0483(PF08282)
908340.HMPREF9406_2764(PF01391)
908340.HMPREF9406_3749PF08011
908340.HMPREF9406_3345PF08011
908340.HMPREF9406_3341PF09820
908340.HMPREF9406_3342PF09820
908340.HMPREF9406_3343PF09820
908340.HMPREF9406_2341PF00359
908340.HMPREF9406_2431(PF08282)
908340.HMPREF9406_4154PF00359
908340.HMPREF9406_4153PF00359
908340.HMPREF9406_1296(PF01381)
908340.HMPREF9406_0675(PF08279)
908340.HMPREF9406_0670(PF06445)
908340.HMPREF9406_3367(PF06777)
908340.HMPREF9406_0874(PF14526)
908340.HMPREF9406_0709(PF01381)
908340.HMPREF9406_0130(PF01381)
908340.HMPREF9406_3397(PF01381)
908340.HMPREF9406_3914(PF01008)
908340.HMPREF9406_3751PF09820
908340.HMPREF9406_3352(PF01381)
908340.HMPREF9406_2403(PF01381)
908340.HMPREF9406_1044(PF04664)
908340.HMPREF9406_1515(PF08282)
908340.HMPREF9406_1287(PF01381)
908340.HMPREF9406_0641(PF08282)
908340.HMPREF9406_0246PF00359
908340.HMPREF9406_0247PF01116
908340.HMPREF9406_0240(PF02734)
908340.HMPREF9406_0241(PF02733)
908340.HMPREF9406_0801(PF01381)
908340.HMPREF9406_0021(PF01381)
908340.HMPREF9406_3294(PF06445)
908340.HMPREF9406_3728(PF01081)
908340.HMPREF9406_3431(PF00232)
908340.HMPREF9406_0373PF00359
908340.HMPREF9406_1702(PF01008)
908340.HMPREF9406_4040(PF01381)
908340.HMPREF9406_4047(PF00232)
908340.HMPREF9406_1499(PF12437)
908340.HMPREF9406_0032PF01116
908340.HMPREF9406_0036PF00359
908340.HMPREF9406_2647(PF00232)
908340.HMPREF9406_2886(PF00232)
908340.HMPREF9406_2887(PF00232)
908340.HMPREF9406_3424PF00359
908340.HMPREF9406_3427PF00359
908340.HMPREF9406_2394(PF08282)
908340.HMPREF9406_2464(PF05935)
908340.HMPREF9406_2266(PF02873)
908340.HMPREF9406_2263(PF02734)
908340.HMPREF9406_4059PF09820
908340.HMPREF9406_4058PF09820
908340.HMPREF9406_4051PF00359
908340.HMPREF9406_4057PF09820
908340.HMPREF9406_4056PF08011
908340.HMPREF9406_0282PF00834
908340.HMPREF9406_0283PF00834
908340.HMPREF9406_0287(PF01081)
908340.HMPREF9406_0623(PF05738)
908340.HMPREF9406_0620(PF01381)
908340.HMPREF9406_3258(PF01391)
908340.HMPREF9406_2898(PF08282)
908340.HMPREF9406_3387(PF01381)
908340.HMPREF9406_1643(PF01784)
908340.HMPREF9406_3415PF00359
908340.HMPREF9406_2099PF09820not used
908340.HMPREF9406_2275(PF12646)
908340.HMPREF9406_4286(PF02733)
908340.HMPREF9406_4287(PF02734)
908340.HMPREF9406_4282PF00359
908340.HMPREF9406_4199PF00359
908340.HMPREF9406_1016PF00359
908340.HMPREF9406_1729(PF08282)
908340.HMPREF9406_1724(PF00232)
908340.HMPREF9406_4267PF01116
908340.HMPREF9406_1834(PF01008)
908340.HMPREF9406_1833(PF03437)
908340.HMPREF9406_0293(PF01081)
908340.HMPREF9406_3132(PF13597)
908340.HMPREF9406_3136PF00359
908340.HMPREF9406_3135(PF01381)
908340.HMPREF9406_2862PF09820
908340.HMPREF9406_2863PF09820
908340.HMPREF9406_2861PF08011
908340.HMPREF9406_2284(PF01381)
908340.HMPREF9406_2444PF09820
908340.HMPREF9406_4183(PF01182)
908340.HMPREF9406_4182(PF01182)
908340.HMPREF9406_4180(PF01182)
908340.HMPREF9406_1135(PF01381)
908340.HMPREF9406_1131(PF08282)
908340.HMPREF9406_0994(PF06445)
908340.HMPREF9406_0991(PF08279)
908340.HMPREF9406_2702(PF08282)
908340.HMPREF9406_2706(PF00215)
908340.HMPREF9406_2672(PF08282)
908340.HMPREF9406_2671(PF08282)
908340.HMPREF9406_2670(PF08282)
908340.HMPREF9406_2679(PF03437)
908340.HMPREF9406_2454PF01116
908340.HMPREF9406_2458(PF00215)
908340.HMPREF9406_2909(PF01381)
908340.HMPREF9406_1391(PF08282)
908340.HMPREF9406_4114PF01116
908340.HMPREF9406_1034(PF08282)
908340.HMPREF9406_1035(PF08282)
908340.HMPREF9406_4083(PF01784)
908340.HMPREF9406_4081(PF01784)
908340.HMPREF9406_4240(PF00232)
908340.HMPREF9406_4241(PF00232)
908340.HMPREF9406_1690(PF03266)
908340.HMPREF9406_3083PF00834
908340.HMPREF9406_1329(PF08282)
908340.HMPREF9406_3461(PF00386)
908340.HMPREF9406_3463(PF01391)
908340.HMPREF9406_3462(PF01391)
908340.HMPREF9406_2607(PF01381)
908340.HMPREF9406_2608(PF01381)
908340.HMPREF9406_2334PF09820
908340.HMPREF9406_2335PF09820
908340.HMPREF9406_2333PF08011
908340.HMPREF9406_3483(PF01391)
908340.HMPREF9406_4090(PF04794)
908340.HMPREF9406_4093(PF13597)
908340.HMPREF9406_1377(PF01554)
908340.HMPREF9406_1207(PF12437)
908340.HMPREF9406_0978(PF01381)
908340.HMPREF9406_0977(PF01381)
908340.HMPREF9406_0570(PF02733)
908340.HMPREF9406_3072PF01116
908340.HMPREF9406_0888(PF01381)
908340.HMPREF9406_3698(PF08282)
908340.HMPREF9406_3455PF00359
908340.HMPREF9406_3457(PF01081)
908340.HMPREF9406_3451(PF00232)not used
908340.HMPREF9406_3452(PF00232)
908340.HMPREF9406_2100PF08011
908340.HMPREF9406_2928(PF06445)
908340.HMPREF9406_2325(PF04794)
908340.HMPREF9406_1303PF08011
908340.HMPREF9406_0367(PF08282)
908340.HMPREF9406_4131(PF01381)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================