Effective results for Desulfobacca acetoxidans DSM 11109 (eggnog40)

Summary

Number of putative secreted proteins: 107
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 107 proteins (8 high, 99 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
880072.Desac_0669				(PF00037) (PF13237)	(ER)
880072.Desac_1825				(PF00684) (PF01556)	(mitochondrial); plastid
880072.Desac_1351				(PF01257) (PF10589) (PF00037) (PF10531)
880072.Desac_1339				(PF16889)	mitochondrial
880072.Desac_0675				(PF13436)	ER
880072.Desac_0250				(PF10531)	ER
880072.Desac_1055				(PF01257) (PF10589) (PF10531)
880072.Desac_0817				(PF00070)	(mitochondrial)
880072.Desac_1072				(PF01257) (PF10589) (PF10531)
880072.Desac_1070				(PF01257) (PF10589) (PF10531)
880072.Desac_0654				PF07798	ER
880072.Desac_1066				(PF01257) (PF10589) (PF10531)
880072.Desac_0535				PF01599	mitochondrial; (mitochondrial)
880072.Desac_2116				(PF01257) (PF10589) (PF10531)
880072.Desac_0991				(PF07998)	ER
880072.Desac_1133				(PF01326)	ER
880072.Desac_2852				(PF06421)	ER
880072.Desac_0403				(PF14701)	ER
880072.Desac_1767				(PF10531)	ER
880072.Desac_1899				(PF10531)	ER
880072.Desac_0436				(PF01326)	(mitochondrial)
880072.Desac_0918				(PF00037) (PF13237)
880072.Desac_0268				(PF01556) (PF00684)
880072.Desac_0735				(PF00037)	(ER)
880072.Desac_0834				(PF13237)	(ER)
880072.Desac_2004				(PF06071)	(mitochondrial)
880072.Desac_2357				(PF01556) (PF00684)
880072.Desac_2433				(PF01555)
880072.Desac_0537				(PF02732)
880072.Desac_1636				PF07798
880072.Desac_0699				(PF02384)
880072.Desac_0075				(PF02384)
880072.Desac_0077				(PF02384)
880072.Desac_0919				(PF00037)
880072.Desac_0910				(PF02384)
880072.Desac_0917				(PF00037)
880072.Desac_2537				(PF00037)
880072.Desac_2538				(PF14697)
880072.Desac_2401				(PF01555)
880072.Desac_1629				(PF06421)
880072.Desac_1622				(PF00037)
880072.Desac_0901				(PF02229)
880072.Desac_1299				PF07798
880072.Desac_1257				PF16575
880072.Desac_0809				PF07798
880072.Desac_0557				(PF05168)
880072.Desac_2394				(PF01326)
880072.Desac_1048				(PF05168)
880072.Desac_1607				(PF01326)
880072.Desac_1866				(PF02384)
880072.Desac_0819				(PF02219)
880072.Desac_2470				(PF01555)
880072.Desac_2073				(PF13246)
880072.Desac_1074				(PF00037)
880072.Desac_0656				(PF10609)
880072.Desac_1384				(PF02384)
880072.Desac_1389				(PF05168)
880072.Desac_0034				(PF02219)
880072.Desac_2440				(PF01326)
880072.Desac_0822				(PF13237)
880072.Desac_0538				(PF02229)
880072.Desac_0754				(PF02384)
880072.Desac_2873				(PF01556)
880072.Desac_0836				(PF14697)
880072.Desac_0837				(PF02219)
880072.Desac_0831				(PF02219)
880072.Desac_2050				(PF03063)
880072.Desac_1341				(PF13246)
880072.Desac_0299				(PF01326)
880072.Desac_1830				(PF00037)
880072.Desac_0527				PF07798
880072.Desac_2119				(PF14697)
880072.Desac_2118				(PF01980)
880072.Desac_0994				(PF10609)
880072.Desac_1642				PF07798
880072.Desac_1004				(PF02943)
880072.Desac_1352				(PF01257)
880072.Desac_1355				(PF14697)
880072.Desac_1828				(PF01555)
880072.Desac_2853				(PF01555)
880072.Desac_1103				(PF00037)
880072.Desac_1101				(PF00037)
880072.Desac_1036				(PF00037)
880072.Desac_0610				(PF01555)
880072.Desac_0188				(PF00037)
880072.Desac_0166				(PF03063)
880072.Desac_0167				(PF14697)
880072.Desac_0763				(PF00037)
880072.Desac_1966				(PF03063)
880072.Desac_2622				(PF05168)
880072.Desac_2310				(PF01980)
880072.Desac_0153				(PF01556)
880072.Desac_0404				(PF01980)
880072.Desac_1046				(PF06071)
880072.Desac_0898				(PF02384)
880072.Desac_1766				(PF10609)
880072.Desac_1948				(PF05189)
880072.Desac_2205				(PF16889)
880072.Desac_1774				(PF01326)
880072.Desac_1317				(PF03063)
880072.Desac_0559				(PF01555)
880072.Desac_0550				(PF13237)
880072.Desac_0314				(PF02219)
880072.Desac_0311				(PF00037)
880072.Desac_1797				(PF02933)
880072.Desac_2963				(PF01555)
880072.Desac_1143				(PF01326)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================