Effective results for Porphyromonas asaccharolytica DSM 20707 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 43 proteins (0 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
879243.Poras_1441				(PF12799)	ER
879243.Poras_0005				(PF13306)	ER
879243.Poras_1634				(PF02368)	ER
879243.Poras_1635				(PF02368)	ER
879243.Poras_0032				(PF02368)	ER
879243.Poras_0486				(PF13306)	ER
879243.Poras_1199				(PF13306)	ER
879243.Poras_1044				(PF12799)	ER
879243.Poras_1720				(PF02368)	ER
879243.Poras_0647				(PF13306)	(mitochondrial)
879243.Poras_0114				(PF02368)	ER
879243.Poras_1646				(PF12799)	ER
879243.Poras_0086				(PF13306)	ER
879243.Poras_0470				(PF13306)	ER
879243.Poras_0892				(PF13306)	ER
879243.Poras_1436				(PF02368)	ER
879243.Poras_0414				(PF13306)	ER
879243.Poras_1592				(PF13306)	ER
879243.Poras_0767				(PF02368)	ER
879243.Poras_1567				(PF12799)	ER
879243.Poras_1568				(PF12799)	ER
879243.Poras_1170				(PF05034) (PF07476)	plastid
879243.Poras_0754				(PF13306)	ER
879243.Poras_0953				(PF13384)	(ER)
879243.Poras_1524				(PF13384)	(ER)
879243.Poras_1190				(PF13384)	(ER)
879243.Poras_1406				(PF13384)	(ER)
879243.Poras_1051				(PF13384)	(ER)
879243.Poras_1222				(PF13384)	(ER)
879243.Poras_1353				(PF07837) (PF02971)
879243.Poras_0023				(PF02368)
879243.Poras_1613				(PF02368)
879243.Poras_0237				(PF02368)
879243.Poras_0850				(PF01715)
879243.Poras_0440				(PF04505)
879243.Poras_0441				(PF04505)
879243.Poras_1136				(PF01715)
879243.Poras_1699				(PF04505)
879243.Poras_0752				(PF05693)
879243.Poras_0436				(PF13306)
879243.Poras_1172				(PF14330)
879243.Poras_0974				(PF16314)
879243.Poras_1622				(PF13306)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================