Effective results for Mycobacterium sinense (eggnog40)
Summary
Number of putative secreted proteins: 281
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 31 eukaryotic-like domains, contained in 281 proteins (3 high, 278 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 875328.JDM601_3276 | (PF01083) | ER; plastid | |||
| 875328.JDM601_3277 | (PF01083) | ER | |||
| 875328.JDM601_3271 | (PF06013) | mitochondrial; (mitochondrial) | |||
| 875328.JDM601_0127 | (PF02470) | ER | |||
| 875328.JDM601_0126 | (PF02470) | ER | |||
| 875328.JDM601_0124 | (PF02470) | ER | |||
| 875328.JDM601_0123 | (PF02470) | ER | |||
| 875328.JDM601_0121 | (PF02405) | mitochondrial | |||
| 875328.JDM601_3470 | (PF02470) | ER | |||
| 875328.JDM601_3471 | (PF02470) | ER | |||
| 875328.JDM601_3472 | (PF02470) | ER | |||
| 875328.JDM601_3473 | (PF02470) | ER | |||
| 875328.JDM601_3097 | (PF01083) | ER | |||
| 875328.JDM601_2226 | (PF13564) | ER | |||
| 875328.JDM601_3469 | (PF02470) | mitochondrial | |||
| 875328.JDM601_3468 | (PF02470) | ER | |||
| 875328.JDM601_3794 | (PF02470) | ER | |||
| 875328.JDM601_3796 | (PF02405) | (mitochondrial) | |||
| 875328.JDM601_1102 | (PF02405) | ER; (ER) | |||
| 875328.JDM601_1103 | (PF02405) | ER | |||
| 875328.JDM601_1100 | (PF02470) | ER | |||
| 875328.JDM601_2903 | (PF09995) | (ER); ER | |||
| 875328.JDM601_3630 | (PF02470) | ER | |||
| 875328.JDM601_3631 | (PF02405) | mitochondrial; (mitochondrial) | |||
| 875328.JDM601_1660 | (PF09995) | ER | |||
| 875328.JDM601_3625 | (PF02470) | ER | |||
| 875328.JDM601_3627 | (PF02470) | ER | |||
| 875328.JDM601_3626 | (PF02470) | (mitochondrial) | |||
| 875328.JDM601_1613 | (PF01083) | ER | |||
| 875328.JDM601_1285 | (PF13810) | ER | |||
| 875328.JDM601_1603 | (PF13564) | ER | |||
| 875328.JDM601_1630 | (PF01083) | ER | |||
| 875328.JDM601_2894 | (PF02470) | ER | |||
| 875328.JDM601_4242 | (PF13622) | (ER) | |||
| 875328.JDM601_0711 | (PF02405) | mitochondrial | |||
| 875328.JDM601_2778 | (PF13564) | ER | |||
| 875328.JDM601_1098 | (PF02470) | ER | |||
| 875328.JDM601_1099 | (PF02470) | ER | |||
| 875328.JDM601_2032 | (PF13564) | ER | |||
| 875328.JDM601_0141 | (PF02405) | mitochondrial | |||
| 875328.JDM601_4263 | (PF00441) | (mitochondrial); (plastid) | |||
| 875328.JDM601_4119 | (PF01083) | (mitochondrial) | |||
| 875328.JDM601_4282 | (PF02470) | ER | |||
| 875328.JDM601_4283 | (PF02470) | ER | |||
| 875328.JDM601_4280 | (PF02470) | ER | |||
| 875328.JDM601_4284 | (PF02470) | ER | |||
| 875328.JDM601_4285 | (PF02470) | ER | |||
| 875328.JDM601_2526 | (PF01113) | (mitochondrial) | |||
| 875328.JDM601_3629 | (PF02470) | ER | |||
| 875328.JDM601_0588 | (PF13564) | ER | |||
| 875328.JDM601_4138 | (PF11196) | ER | |||
| 875328.JDM601_3791 | (PF02470) | (ER); (plastid) | |||
| 875328.JDM601_3790 | (PF02470) | ER | |||
| 875328.JDM601_3793 | (PF02470) | (ER) | |||
| 875328.JDM601_2091 | (PF13564) | ER | |||
| 875328.JDM601_2898 | (PF02470) | ER | |||
| 875328.JDM601_2892 | (PF02405) | mitochondrial | |||
| 875328.JDM601_2895 | (PF02470) | (mitochondrial) | |||
| 875328.JDM601_2897 | (PF02470) | ER | |||
| 875328.JDM601_2896 | (PF02470) | ER | |||
| 875328.JDM601_0484 | (PF11196) | ER | |||
| 875328.JDM601_0138 | (PF02470) | mitochondrial; (mitochondrial) | |||
| 875328.JDM601_0139 | (PF02470) | ER | |||
| 875328.JDM601_0135 | (PF02470) | mitochondrial | |||
| 875328.JDM601_0125 | (PF02470) | (ER) | |||
| 875328.JDM601_0120 | (PF02405) | (mitochondrial) | |||
| 875328.JDM601_4168 | (PF00743) | (plastid) | |||
| 875328.JDM601_3647 | (PF03007) (PF06974) | ||||
| 875328.JDM601_3254 | (PF07224) | (ER) | |||
| 875328.JDM601_3989 | (PF13810) | (ER) | |||
| 875328.JDM601_2969 | (PF06974) (PF03007) | ||||
| 875328.JDM601_0054 | (PF06013) | (plastid) | |||
| 875328.JDM601_0187 | (PF03007) (PF06974) | ||||
| 875328.JDM601_4247 | (PF00743) | (mitochondrial) | |||
| 875328.JDM601_0543 | (PF03007) (PF06974) | ||||
| 875328.JDM601_2498 | (PF03007) (PF06974) | ||||
| 875328.JDM601_1423 | (PF06974) (PF03007) | ||||
| 875328.JDM601_2983 | (PF06974) (PF03007) | ||||
| 875328.JDM601_4052 | (PF14232) (PF14231) | ||||
| 875328.JDM601_2662 | (PF14232) (PF14231) | ||||
| 875328.JDM601_4029 | (PF06974) (PF03007) | ||||
| 875328.JDM601_2891 | (PF02405) | (mitochondrial) | |||
| 875328.JDM601_2797 | (PF00441) | ||||
| 875328.JDM601_0658 | (PF13452) | ||||
| 875328.JDM601_0494 | (PF13622) | ||||
| 875328.JDM601_3270 | (PF06013) | ||||
| 875328.JDM601_0852 | (PF00441) | ||||
| 875328.JDM601_0875 | (PF01113) | ||||
| 875328.JDM601_0870 | (PF00441) | ||||
| 875328.JDM601_3302 | (PF04072) | ||||
| 875328.JDM601_3303 | (PF04072) | ||||
| 875328.JDM601_4058 | (PF13622) | ||||
| 875328.JDM601_1534 | (PF00441) | ||||
| 875328.JDM601_0122 | (PF02470) | ||||
| 875328.JDM601_4009 | (PF02353) | ||||
| 875328.JDM601_4007 | (PF02353) | ||||
| 875328.JDM601_0302 | (PF04909) | ||||
| 875328.JDM601_4171 | (PF00743) | ||||
| 875328.JDM601_3508 | (PF00441) | ||||
| 875328.JDM601_3509 | (PF00441) | ||||
| 875328.JDM601_1000 | (PF06013) | ||||
| 875328.JDM601_3507 | (PF00441) | ||||
| 875328.JDM601_4220 | (PF04909) | ||||
| 875328.JDM601_3501 | (PF04909) | ||||
| 875328.JDM601_2781 | (PF00743) | ||||
| 875328.JDM601_0660 | (PF13452) | ||||
| 875328.JDM601_0665 | (PF02353) | ||||
| 875328.JDM601_0666 | (PF02353) | ||||
| 875328.JDM601_1823 | (PF09995) | ||||
| 875328.JDM601_0687 | (PF00441) | ||||
| 875328.JDM601_3865 | (PF00441) | ||||
| 875328.JDM601_1497 | (PF00441) | ||||
| 875328.JDM601_1498 | (PF00441) | ||||
| 875328.JDM601_3797 | (PF02405) | ||||
| 875328.JDM601_0208 | (PF09995) | ||||
| 875328.JDM601_0206 | (PF09995) | ||||
| 875328.JDM601_3083 | (PF01083) | ||||
| 875328.JDM601_1101 | (PF02470) | ||||
| 875328.JDM601_2358 | (PF06013) | ||||
| 875328.JDM601_2357 | (PF06013) | ||||
| 875328.JDM601_0851 | (PF00441) | ||||
| 875328.JDM601_2127 | (PF13622) | ||||
| 875328.JDM601_0073 | (PF13810) | ||||
| 875328.JDM601_2902 | (PF09995) | ||||
| 875328.JDM601_3552 | (PF00441) | ||||
| 875328.JDM601_0289 | (PF04072) | ||||
| 875328.JDM601_3411 | (PF00441) | ||||
| 875328.JDM601_0500 | (PF13452) | ||||
| 875328.JDM601_3636 | (PF00441) | ||||
| 875328.JDM601_3635 | (PF00441) | ||||
| 875328.JDM601_3632 | (PF02405) | ||||
| 875328.JDM601_3744 | (PF04909) | ||||
| 875328.JDM601_3749 | (PF13452) | ||||
| 875328.JDM601_3248 | (PF00743) | ||||
| 875328.JDM601_0732 | (PF00441) | ||||
| 875328.JDM601_2807 | (PF04909) | ||||
| 875328.JDM601_3408 | (PF00441) | ||||
| 875328.JDM601_0191 | (PF00441) | ||||
| 875328.JDM601_4219 | (PF04909) | ||||
| 875328.JDM601_0229 | (PF00441) | ||||
| 875328.JDM601_2593 | (PF09995) | ||||
| 875328.JDM601_0452 | (PF02353) | ||||
| 875328.JDM601_0451 | (PF02353) | ||||
| 875328.JDM601_0929 | (PF00441) | ||||
| 875328.JDM601_3756 | (PF00441) | ||||
| 875328.JDM601_3759 | (PF00441) | ||||
| 875328.JDM601_1873 | (PF09995) | ||||
| 875328.JDM601_2574 | (PF00441) | ||||
| 875328.JDM601_1903 | (PF06013) | ||||
| 875328.JDM601_1904 | (PF06013) | ||||
| 875328.JDM601_3292 | (PF00441) | ||||
| 875328.JDM601_1616 | (PF01113) | ||||
| 875328.JDM601_3437 | (PF04909) | ||||
| 875328.JDM601_0184 | (PF00441) | ||||
| 875328.JDM601_0181 | (PF00441) | ||||
| 875328.JDM601_0183 | (PF00441) | ||||
| 875328.JDM601_4227 | (PF13452) | ||||
| 875328.JDM601_1289 | PF05241 | ||||
| 875328.JDM601_1047 | (PF09995) | ||||
| 875328.JDM601_1138 | (PF04072) | ||||
| 875328.JDM601_1134 | (PF04909) | ||||
| 875328.JDM601_3764 | (PF00441) | ||||
| 875328.JDM601_3767 | (PF00441) | ||||
| 875328.JDM601_3760 | (PF04909) | ||||
| 875328.JDM601_0999 | (PF06013) | ||||
| 875328.JDM601_0739 | (PF00441) | ||||
| 875328.JDM601_0733 | (PF00441) | ||||
| 875328.JDM601_0730 | (PF00441) | ||||
| 875328.JDM601_0731 | (PF00441) | ||||
| 875328.JDM601_0735 | (PF00441) | ||||
| 875328.JDM601_3354 | (PF02958) | ||||
| 875328.JDM601_2175 | (PF04072) | ||||
| 875328.JDM601_3979 | (PF02353) | ||||
| 875328.JDM601_2820 | (PF06013) | ||||
| 875328.JDM601_3425 | (PF04909) | ||||
| 875328.JDM601_3512 | (PF01113) | ||||
| 875328.JDM601_3516 | (PF00441) | ||||
| 875328.JDM601_3515 | (PF00441) | ||||
| 875328.JDM601_2484 | (PF09995) | ||||
| 875328.JDM601_2483 | (PF03161) | ||||
| 875328.JDM601_3778 | (PF00441) | ||||
| 875328.JDM601_3777 | (PF00441) | ||||
| 875328.JDM601_3776 | (PF00441) | ||||
| 875328.JDM601_3366 | (PF13622) | ||||
| 875328.JDM601_1631 | (PF01083) | ||||
| 875328.JDM601_1633 | (PF03492) | ||||
| 875328.JDM601_3384 | (PF04909) | ||||
| 875328.JDM601_3388 | (PF00441) | ||||
| 875328.JDM601_3389 | (PF04909) | ||||
| 875328.JDM601_2944 | (PF00441) | ||||
| 875328.JDM601_2943 | (PF00441) | ||||
| 875328.JDM601_0094 | (PF04072) | ||||
| 875328.JDM601_2387 | (PF13622) | ||||
| 875328.JDM601_2542 | (PF00441) | ||||
| 875328.JDM601_0710 | (PF02405) | ||||
| 875328.JDM601_2544 | (PF13452) | ||||
| 875328.JDM601_3376 | (PF00441) | ||||
| 875328.JDM601_3371 | (PF04909) | ||||
| 875328.JDM601_3391 | (PF04909) | ||||
| 875328.JDM601_2028 | (PF02353) | ||||
| 875328.JDM601_2029 | (PF02353) | ||||
| 875328.JDM601_2025 | (PF02353) | ||||
| 875328.JDM601_2026 | (PF02353) | ||||
| 875328.JDM601_2020 | (PF04072) | ||||
| 875328.JDM601_1383 | (PF08354) | ||||
| 875328.JDM601_2849 | (PF00441) | ||||
| 875328.JDM601_1096 | (PF02470) | ||||
| 875328.JDM601_1097 | (PF02470) | ||||
| 875328.JDM601_1093 | (PF04909) | ||||
| 875328.JDM601_0377 | (PF04072) | ||||
| 875328.JDM601_3719 | (PF00441) | ||||
| 875328.JDM601_3718 | (PF00441) | ||||
| 875328.JDM601_3716 | (PF00441) | ||||
| 875328.JDM601_0703 | (PF00441) | ||||
| 875328.JDM601_3147 | (PF02544) | ||||
| 875328.JDM601_1895 | (PF06013) | ||||
| 875328.JDM601_1896 | (PF06013) | ||||
| 875328.JDM601_3810 | (PF00441) | ||||
| 875328.JDM601_3811 | (PF00441) | ||||
| 875328.JDM601_0140 | (PF02470) | ||||
| 875328.JDM601_0142 | (PF02405) | ||||
| 875328.JDM601_2856 | (PF00441) | ||||
| 875328.JDM601_2850 | (PF00441) | ||||
| 875328.JDM601_4264 | (PF00441) | ||||
| 875328.JDM601_0560 | (PF00743) | ||||
| 875328.JDM601_0365 | (PF13564) | ||||
| 875328.JDM601_3720 | (PF00441) | ||||
| 875328.JDM601_4218 | (PF04909) | ||||
| 875328.JDM601_4286 | (PF02405) | ||||
| 875328.JDM601_4287 | (PF02405) | ||||
| 875328.JDM601_3031 | (PF00441) | ||||
| 875328.JDM601_1958 | (PF02026) | ||||
| 875328.JDM601_1410 | (PF04072) | ||||
| 875328.JDM601_3553 | (PF00441) | ||||
| 875328.JDM601_0288 | (PF06013) | ||||
| 875328.JDM601_3485 | (PF00441) | ||||
| 875328.JDM601_3484 | (PF00441) | ||||
| 875328.JDM601_3487 | (PF04909) | ||||
| 875328.JDM601_3486 | (PF04909) | ||||
| 875328.JDM601_2515 | (PF00441) | ||||
| 875328.JDM601_3628 | (PF02470) | ||||
| 875328.JDM601_2465 | (PF00441) | ||||
| 875328.JDM601_0839 | PF05241 | ||||
| 875328.JDM601_1405 | (PF00441) | ||||
| 875328.JDM601_1578 | (PF00441) | ||||
| 875328.JDM601_0296 | (PF06013) | ||||
| 875328.JDM601_0582 | (PF13622) | ||||
| 875328.JDM601_0587 | (PF13622) | ||||
| 875328.JDM601_3795 | (PF02470) | ||||
| 875328.JDM601_1997 | (PF17048) | ||||
| 875328.JDM601_3829 | (PF00441) | ||||
| 875328.JDM601_3828 | (PF13452) | ||||
| 875328.JDM601_0116 | (PF00743) | ||||
| 875328.JDM601_0029 | (PF00743) | ||||
| 875328.JDM601_2210 | (PF04072) | ||||
| 875328.JDM601_2884 | (PF01083) | ||||
| 875328.JDM601_4128 | (PF01744) | ||||
| 875328.JDM601_0749 | (PF04072) | ||||
| 875328.JDM601_0926 | (PF00441) | ||||
| 875328.JDM601_0922 | (PF09995) | ||||
| 875328.JDM601_3210 | (PF00441) | ||||
| 875328.JDM601_3212 | (PF13452) | ||||
| 875328.JDM601_2076 | PF04622 | ||||
| 875328.JDM601_2074 | (PF02958) | ||||
| 875328.JDM601_3850 | (PF04909) | ||||
| 875328.JDM601_0105 | (PF13622) | ||||
| 875328.JDM601_0108 | (PF13622) | ||||
| 875328.JDM601_2893 | (PF02470) | ||||
| 875328.JDM601_3690 | (PF00441) | ||||
| 875328.JDM601_3691 | (PF00441) | ||||
| 875328.JDM601_0253 | (PF00441) | ||||
| 875328.JDM601_0799 | (PF00441) | ||||
| 875328.JDM601_3844 | (PF00441) | ||||
| 875328.JDM601_3840 | (PF00441) | ||||
| 875328.JDM601_0136 | (PF02470) | ||||
| 875328.JDM601_0137 | (PF02470) | ||||
| 875328.JDM601_0316 | (PF09995) | ||||
| 875328.JDM601_3689 | (PF13452) | ||||
| 875328.JDM601_3684 | (PF13452) | ||||
| 875328.JDM601_1010 | (PF01113) | ||||
| 875328.JDM601_0260 | (PF00441) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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