Effective results for Prevotella oralis ATCC 33269 (eggnog40)

Summary

Number of putative secreted proteins: 51
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 51 proteins (4 high, 47 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
873533.HMPREF0663_11791PF16334 PF16335 PF08760 PF17168ER
873533.HMPREF0663_10916PF16334 PF16335 PF08760 PF17168ER
873533.HMPREF0663_10918PF16334 PF16335 PF08760 PF17168ER
873533.HMPREF0663_10601(PF13905)ER
873533.HMPREF0663_10987(PF03051)ER
873533.HMPREF0663_10215(PF07971)ER
873533.HMPREF0663_10417(PF03051)ER
873533.HMPREF0663_12266(PF00216)mitochondrial; (mitochondrial)
873533.HMPREF0663_10337(PF05704)mitochondrial
873533.HMPREF0663_11309(PF07971)ER
873533.HMPREF0663_11870(PF07971)ER
873533.HMPREF0663_12470(PF00686)(mitochondrial)
873533.HMPREF0663_10693(PF00328)ER
873533.HMPREF0663_10901PF11885(ER)
873533.HMPREF0663_11530(PF07971)ER
873533.HMPREF0663_10259(PF13905)ER
873533.HMPREF0663_10589(PF07971)ER
873533.HMPREF0663_11860(PF03644)ER
873533.HMPREF0663_11861(PF03644)ER
873533.HMPREF0663_11311(PF07971)ER
873533.HMPREF0663_10387(PF03663)ER
873533.HMPREF0663_12157(PF01715)mitochondrial
873533.HMPREF0663_11179(PF03663)ER
873533.HMPREF0663_11713(PF13905)ER
873533.HMPREF0663_10447(PF00328)ER
873533.HMPREF0663_11802(PF00216)(mitochondrial)
873533.HMPREF0663_11310(PF04450)plastid
873533.HMPREF0663_12196(PF00216)(mitochondrial)
873533.HMPREF0663_12170(PF05693)
873533.HMPREF0663_11557(PF03051)
873533.HMPREF0663_10865(PF04488)
873533.HMPREF0663_10866(PF11051)
873533.HMPREF0663_11585(PF13155)
873533.HMPREF0663_11105(PF13155)
873533.HMPREF0663_10898(PF04488)
873533.HMPREF0663_12265(PF00216)
873533.HMPREF0663_12312(PF00216)
873533.HMPREF0663_12124(PF00216)
873533.HMPREF0663_12201(PF00216)
873533.HMPREF0663_11245(PF16314)
873533.HMPREF0663_10203(PF13155)
873533.HMPREF0663_11237(PF16011)
873533.HMPREF0663_10291(PF00216)
873533.HMPREF0663_11514(PF00216)
873533.HMPREF0663_12397(PF13905)
873533.HMPREF0663_11002(PF03630)
873533.HMPREF0663_10025(PF00686)
873533.HMPREF0663_12140(PF00216)
873533.HMPREF0663_12417(PF02689)
873533.HMPREF0663_12415(PF01715)
873533.HMPREF0663_11147(PF13155)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================