Metamenu

Effective results for Parachlamydia acanthamoebae UV-7 (eggnog40)

Summary

Number of putative secreted proteins: 440
- Predicted by EffectiveT3: 149 (high confidence), 148 (low confidence)
- Predicted by EffectiveCCBD: 23 within, 14 before, 31 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 38 eukaryotic-like domains, contained in 107 proteins (41 high, 66 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
765952.PUV_04830PF06881 (PF12937)ER; (ER)
765952.PUV_00750+ER
765952.PUV_00530+mitochondrial
765952.PUV_07180+(mitochondrial)
765952.PUV_12020(PF05593)ER
765952.PUV_01720(PF05593)ER
765952.PUV_09600(<)ER
765952.PUV_00260PF03414ER
765952.PUV_13490(>)(ER); ER
765952.PUV_08230(<)ER
765952.PUV_20590(PF05593)ER
765952.PUV_26230(PF05593)ER
765952.PUV_10890+(>)(plastid)
765952.PUV_25630+ER
765952.PUV_24920(PF05593)ER
765952.PUV_23580(>)mitochondrial; (mitochondrial)
765952.PUV_17170(PF03222)ER
765952.PUV_00720(+)(PF03222)ER
765952.PUV_20760+ER
765952.PUV_00240(<)ER
765952.PUV_00710(PF03222)ER
765952.PUV_03800(>)ER
765952.PUV_20630(PF05593)ER
765952.PUV_16610(PF03647)ER
765952.PUV_24720PF03219(ER)
765952.PUV_00930(>)ER
765952.PUV_21230+mitochondrial
765952.PUV_06460(<)(mitochondrial)
765952.PUV_16740(<)ER
765952.PUV_22590+ER
765952.PUV_07690+(mitochondrial); (plastid)
765952.PUV_07870(<)ER
765952.PUV_21030+ER
765952.PUV_13370+ER
765952.PUV_21020(>)ER
765952.PUV_25580(>)ER
765952.PUV_13770(PF01697)ER
765952.PUV_12880(<)ER
765952.PUV_25110(>)ER
765952.PUV_01810+ER
765952.PUV_26300+(mitochondrial)
765952.PUV_07430+(ER)
765952.PUV_25300(PF14566)(ER)
765952.PUV_00990+ER
765952.PUV_00760(PF01129)mitochondrial
765952.PUV_17630+(PF07931)
765952.PUV_23020(+)(mitochondrial); plastid
765952.PUV_19470(+)(>)(mitochondrial)
765952.PUV_05920(>)(mitochondrial)
765952.PUV_13920+PF00240
765952.PUV_25320+(plastid)
765952.PUV_06710+PF00102
765952.PUV_26990(>)(mitochondrial)
765952.PUV_03270+(PF00651)
765952.PUV_23460(PF00872)(plastid)
765952.PUV_05050+(PF00872)
765952.PUV_09120+PF02194
765952.PUV_01420+(plastid)
765952.PUV_06490(>)(PF00023)
765952.PUV_14790+(PF00454)
765952.PUV_12000+(PF05593)
765952.PUV_06730+PF00102
765952.PUV_18430PF05148(mitochondrial)
765952.PUV_19320(>)(ER)
765952.PUV_19690PF12340(plastid)
765952.PUV_15590+(plastid)
765952.PUV_24010+(plastid)
765952.PUV_05570(>)(ER)
765952.PUV_08600(PF12937)(ER)
765952.PUV_23040(+)(ER); (plastid)
765952.PUV_23130(+)(PF02493)(plastid)
765952.PUV_16940+(PF02493)
765952.PUV_26090(PF03222)(ER)
765952.PUV_08070(+)mitochondrial; (mitochondrial)
765952.PUV_00100++
765952.PUV_16630(+)(mitochondrial)
765952.PUV_02980(<)PF05677
765952.PUV_22570(+)ER
765952.PUV_12920(+)(mitochondrial)
765952.PUV_08120+(plastid)
765952.PUV_11010+(PF12937)
765952.PUV_11220+plastid
765952.PUV_11890+(mitochondrial); not used
765952.PUV_14720PF06552(mitochondrial)
765952.PUV_11620(+)ER
765952.PUV_22340+(plastid)
765952.PUV_15920+(plastid)
765952.PUV_17040(>)(mitochondrial)
765952.PUV_18840PF00443(plastid)
765952.PUV_16920(+)(mitochondrial)
765952.PUV_15990(+)mitochondrial
765952.PUV_13620+(PF00617)
765952.PUV_12750+PF04564
765952.PUV_10820++
765952.PUV_15740+(>)
765952.PUV_25770+(plastid)
765952.PUV_03980(PF02504)
765952.PUV_12030(PF12937)
765952.PUV_08500+
765952.PUV_10590+
765952.PUV_05450+
765952.PUV_19680(+)(mitochondrial)
765952.PUV_05290+
765952.PUV_21790+
765952.PUV_21060+
765952.PUV_21880PF02257
765952.PUV_12690+
765952.PUV_07740(>)
765952.PUV_08180(+)+
765952.PUV_25140(PF00872)
765952.PUV_13810+
765952.PUV_06900(PF09243)
765952.PUV_07360(+)(ER)
765952.PUV_23490(PF00872)
765952.PUV_16510(PF05932)
765952.PUV_24940(PF00872)
765952.PUV_14820(PF14938)
765952.PUV_23470(PF00872)
765952.PUV_05110+
765952.PUV_26170+
765952.PUV_13640+
765952.PUV_10110+
765952.PUV_09110+
765952.PUV_05840+
765952.PUV_04220+
765952.PUV_17920(PF07931)
765952.PUV_20740(+)(ER)
765952.PUV_15220+
765952.PUV_17810+
765952.PUV_07370+
765952.PUV_26660+
765952.PUV_16210PF00646
765952.PUV_11930(PF00872)not used
765952.PUV_14960PF12340
765952.PUV_18890(PF02493)
765952.PUV_05430+
765952.PUV_13650+not used
765952.PUV_15940+
765952.PUV_22040+
765952.PUV_27580+
765952.PUV_00730(PF00023)
765952.PUV_07760+
765952.PUV_00080+
765952.PUV_14370(+)(plastid)
765952.PUV_21350+
765952.PUV_00460PF04564
765952.PUV_16530+
765952.PUV_11920(PF00872)not used
765952.PUV_17790(>)
765952.PUV_02360(+)(mitochondrial)
765952.PUV_16830+
765952.PUV_23850+
765952.PUV_19330+
765952.PUV_05130PF07720
765952.PUV_23920+not used
765952.PUV_19750+
765952.PUV_00890PF04564
765952.PUV_09620(PF00872)
765952.PUV_07770(PF05932)
765952.PUV_00470+
765952.PUV_15140+
765952.PUV_07150+
765952.PUV_06820(>)
765952.PUV_12640+
765952.PUV_25530(PF01704)
765952.PUV_16230+
765952.PUV_12250+
765952.PUV_13060+
765952.PUV_10470(>)
765952.PUV_02810(>)
765952.PUV_05140+
765952.PUV_04940+
765952.PUV_01130(+)PF00620
765952.PUV_16950(PF02493)
765952.PUV_08410PF07720
765952.PUV_20970+
765952.PUV_14310PF00646
765952.PUV_00440(PF09243)
765952.PUV_06940+
765952.PUV_04610+
765952.PUV_17990(>)
765952.PUV_16000(PF12937)
765952.PUV_16310+
765952.PUV_05320(PF05932)
765952.PUV_18880(+)(PF02493)
765952.PUV_03480+
765952.PUV_17680(<)
765952.PUV_11460+
765952.PUV_05150PF07720
765952.PUV_04970(+)(PF00872)
765952.PUV_26080+
765952.PUV_13990+
765952.PUV_01500+
765952.PUV_00450+
765952.PUV_07480+
765952.PUV_13040+
765952.PUV_05040(PF00872)
765952.PUV_14610+
765952.PUV_05760+
765952.PUV_24730(+)PF03219
765952.PUV_22390+
765952.PUV_05160+
765952.PUV_05180(PF05932)
765952.PUV_14010+
765952.PUV_09090+
765952.PUV_11370+
765952.PUV_20550+
765952.PUV_04100(PF03222)
765952.PUV_07100+
765952.PUV_25700+
765952.PUV_24380+
765952.PUV_17510+
765952.PUV_03220+
765952.PUV_02990+
765952.PUV_03910(PF02504)
765952.PUV_03350PF05677
765952.PUV_02510PF00443
765952.PUV_23890+
765952.PUV_18570+
765952.PUV_05370+
765952.PUV_09400(<)not used
765952.PUV_05190+
765952.PUV_08590PF00646not used
765952.PUV_11560(+)PF00102
765952.PUV_21490+
765952.PUV_10190(>)
765952.PUV_14290PF00646
765952.PUV_07200+
765952.PUV_12730+
765952.PUV_19790+
765952.PUV_06240+
765952.PUV_01980+
765952.PUV_16340+
765952.PUV_02180PF03219
765952.PUV_16120+
765952.PUV_03960+
765952.PUV_23400(PF05593)
765952.PUV_17650(>)
765952.PUV_05340+
765952.PUV_08050+
765952.PUV_18980+
765952.PUV_07050(PF12937)
765952.PUV_16750+
765952.PUV_03620+
765952.PUV_14660+
765952.PUV_14710+
765952.PUV_08930+
765952.PUV_17080+
765952.PUV_05750+
765952.PUV_02970PF05677
765952.PUV_03970(PF02504)
765952.PUV_15530+
765952.PUV_23500(PF00872)
765952.PUV_05350(PF05932)
765952.PUV_22580+
765952.PUV_00490+
765952.PUV_19040(<)
765952.PUV_20980+
765952.PUV_09410+
765952.PUV_09850(>)
765952.PUV_12540PF00612
765952.PUV_16650+
765952.PUV_01940(PF01704)
765952.PUV_13570(>)
765952.PUV_18010+
765952.PUV_18700PF00646
765952.PUV_02140+
765952.PUV_09320+
765952.PUV_01040+
765952.PUV_26100(+)PF12340
765952.PUV_05250+
765952.PUV_08490+
765952.PUV_07670+
765952.PUV_20510+
765952.PUV_20860PF03219
765952.PUV_14260+
765952.PUV_09480(PF00872)
765952.PUV_04810(<)
765952.PUV_12760+
765952.PUV_06230(+)(ER)
765952.PUV_25210+
765952.PUV_14640+
765952.PUV_10540(PF12937)
765952.PUV_01950(PF02201)
765952.PUV_18000(+)(mitochondrial)
765952.PUV_23520+
765952.PUV_01780+
765952.PUV_19260+
765952.PUV_26310+
765952.PUV_07060PF00646
765952.PUV_15030PF12340
765952.PUV_10930(+)(PF00023)
765952.PUV_00340+
765952.PUV_10550+
765952.PUV_13590(PF12937)
765952.PUV_23220+
765952.PUV_14000+
765952.PUV_23820+
765952.PUV_15280+
765952.PUV_01370+
765952.PUV_08760(PF02201)
765952.PUV_20400(PF09825)
765952.PUV_20790(>)
765952.PUV_21310(+)PF05677
765952.PUV_17820+
765952.PUV_24360(>)
765952.PUV_11180+
765952.PUV_14750+
765952.PUV_16660(>)
765952.PUV_23030(>)
765952.PUV_18730+
765952.PUV_11610+
765952.PUV_27220+
765952.PUV_14020(+)PF00646
765952.PUV_03130PF00646
765952.PUV_10130(+)(plastid)
765952.PUV_00500+
765952.PUV_17350(<)
765952.PUV_20120PF07720
765952.PUV_11420(<)
765952.PUV_02350(>)
765952.PUV_01900+
765952.PUV_18050(+)
765952.PUV_10170(+)
765952.PUV_15960(+)
765952.PUV_04210(+)
765952.PUV_08740(+)not used
765952.PUV_25430(+)
765952.PUV_09770(+)
765952.PUV_20100(+)
765952.PUV_24110(+)
765952.PUV_13310(+)not used
765952.PUV_16840(+)
765952.PUV_21640(+)not used
765952.PUV_00880(+)
765952.PUV_10870(+)
765952.PUV_12650(+)
765952.PUV_05600(+)
765952.PUV_17770(+)
765952.PUV_05080(+)
765952.PUV_13270(+)
765952.PUV_04770(+)
765952.PUV_05630(+)
765952.PUV_03920(+)
765952.PUV_05700(+)
765952.PUV_05090(+)
765952.PUV_08520(+)
765952.PUV_19100(+)
765952.PUV_17970(+)
765952.PUV_21190(+)
765952.PUV_20480(+)
765952.PUV_15130(+)
765952.PUV_23610(+)
765952.PUV_24670(+)
765952.PUV_05710(+)
765952.PUV_12060(+)
765952.PUV_22520(+)
765952.PUV_16960(+)
765952.PUV_20360(+)
765952.PUV_06260(+)
765952.PUV_15580(+)
765952.PUV_15490(+)
765952.PUV_12050(+)
765952.PUV_09250(+)
765952.PUV_23550(+)
765952.PUV_10620(+)
765952.PUV_13450(+)
765952.PUV_27250(+)
765952.PUV_21600(+)
765952.PUV_12870(+)
765952.PUV_08470(+)
765952.PUV_12900(+)
765952.PUV_15110(+)
765952.PUV_20730(+)
765952.PUV_24250(+)
765952.PUV_22810a(+)
765952.PUV_03080(+)
765952.PUV_01070(+)
765952.PUV_01670(+)
765952.PUV_01210(+)
765952.PUV_19020(+)not used
765952.PUV_21120(+)
765952.PUV_09790(+)
765952.PUV_12530(+)
765952.PUV_10990(+)
765952.PUV_03030(+)
765952.PUV_11770(+)
765952.PUV_13550(+)
765952.PUV_19490(+)not used
765952.PUV_19380(+)
765952.PUV_22750(+)
765952.PUV_21000(+)
765952.PUV_12700(+)
765952.PUV_06090(+)
765952.PUV_16540(+)
765952.PUV_05220(+)
765952.PUV_22630(+)
765952.PUV_06400(+)
765952.PUV_14380(+)
765952.PUV_25730(+)
765952.PUV_15450(+)
765952.PUV_03410(+)
765952.PUV_27070(+)
765952.PUV_18490(+)
765952.PUV_09210(+)
765952.PUV_15830(+)
765952.PUV_11530(+)
765952.PUV_07780(+)
765952.PUV_15600(+)
765952.PUV_12080(+)
765952.PUV_13560(+)
765952.PUV_12170(+)
765952.PUV_18500(+)
765952.PUV_23830(+)
765952.PUV_26000(+)
765952.PUV_06930(+)
765952.PUV_27430(+)
765952.PUV_24790(+)
765952.PUV_05490(+)
765952.PUV_02430(+)
765952.PUV_04870(+)
765952.PUV_16880(+)
765952.PUV_04270(+)
765952.PUV_26540(+)
765952.PUV_24090(+)
765952.PUV_17590(+)not used
765952.PUV_18580(+)
765952.PUV_05310(+)
765952.PUV_22250(+)
765952.PUV_02060(+)
765952.PUV_08570(+)
765952.PUV_16870(+)
765952.PUV_22670(+)
765952.PUV_21090(+)
765952.PUV_12990(+)
765952.PUV_03520(+)
765952.PUV_16690(+)
765952.PUV_25400(+)
765952.PUV_11880(+)
765952.PUV_22030(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.1 (11/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================