Effective results for Succinatimonas hippei YIT 12066 (eggnog40)

Summary

Number of putative secreted proteins: 35
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 35 proteins (0 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
762983.HMPREF9444_01344				(PF00209)	ER
762983.HMPREF9444_02250				(PF01000) (PF01193)
762983.HMPREF9444_02077				(PF09820) (PF08011)	not used
762983.HMPREF9444_02248				(PF01000) (PF01193)
762983.HMPREF9444_01345				(PF00209)	(ER)
762983.HMPREF9444_00369				(PF02661)	(mitochondrial)
762983.HMPREF9444_01167				(PF09820) (PF08011)
762983.HMPREF9444_01768				(PF09820) (PF08011)
762983.HMPREF9444_01071				(PF09820)	(plastid)
762983.HMPREF9444_01130				(PF08011)
762983.HMPREF9444_01912				(PF02661)
762983.HMPREF9444_01916				(PF09820)	not used
762983.HMPREF9444_00648				(PF02661)
762983.HMPREF9444_00522				(PF02661)
762983.HMPREF9444_01343				(PF00209)
762983.HMPREF9444_01978				(PF09820)
762983.HMPREF9444_01808				(PF05932)
762983.HMPREF9444_00617				(PF05932)
762983.HMPREF9444_01174				(PF02661)
762983.HMPREF9444_00604				(PF07720)
762983.HMPREF9444_00361				(PF00209)
762983.HMPREF9444_00392				(PF02661)
762983.HMPREF9444_01023				(PF09820)
762983.HMPREF9444_01024				(PF08011)
762983.HMPREF9444_01146				(PF02661)
762983.HMPREF9444_02084				(PF09820)
762983.HMPREF9444_00546				(PF08011)	not used
762983.HMPREF9444_00936				(PF05932)
762983.HMPREF9444_01183				(PF00209)
762983.HMPREF9444_01613				(PF09820)
762983.HMPREF9444_00225				(PF02661)
762983.HMPREF9444_01072				(PF09820)
762983.HMPREF9444_01073				(PF08011)
762983.HMPREF9444_02200				(PF08011)
762983.HMPREF9444_00066				(PF05932)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================