Effective results for Rahnella aquatilis CIP 78.65 = ATCC 33071 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 37 proteins (2 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
745277.Rahaq2_1388				(PF13276)	(mitochondrial)
745277.Rahaq2_2615				(PF13276)	(mitochondrial)
745277.Rahaq2_1363				(PF02415)	ER
745277.Rahaq2_2273				(PF13276)	(mitochondrial)
745277.Rahaq2_1210				(PF13276)	(mitochondrial)
745277.Rahaq2_3591				(PF10462)	ER
745277.Rahaq2_1358				(PF13276)	(mitochondrial)
745277.Rahaq2_1903				(PF13276)	(mitochondrial)
745277.Rahaq2_1859				(PF13276)	(mitochondrial)
745277.Rahaq2_0221				(PF13276)	(mitochondrial)
745277.Rahaq2_3193				(PF02112)	ER
745277.Rahaq2_3760				(PF13276)	(mitochondrial)
745277.Rahaq2_2753				PF12255 (PF12256)
745277.Rahaq2_2747				PF12255 (PF12256)
745277.Rahaq2_4409				(PF13347)	(ER)
745277.Rahaq2_1139				(PF13347)
745277.Rahaq2_0550				(PF13332)
745277.Rahaq2_4329				(PF08950)
745277.Rahaq2_1146				(PF13347)
745277.Rahaq2_3804				(PF13347)
745277.Rahaq2_1979				(PF00834)
745277.Rahaq2_0291				(PF00834)
745277.Rahaq2_4334				(PF13332)
745277.Rahaq2_2674				(PF13276)
745277.Rahaq2_1533				(PF05929)
745277.Rahaq2_3327				(PF05929)
745277.Rahaq2_1255				(PF13347)
745277.Rahaq2_1800				(PF13347)
745277.Rahaq2_2755				(PF03538)
745277.Rahaq2_4176				(PF13347)
745277.Rahaq2_4177				(PF13347)
745277.Rahaq2_2749				(PF03538)
745277.Rahaq2_2171				(PF13332)
745277.Rahaq2_2586				(PF13347)
745277.Rahaq2_3567				(PF00834)
745277.Rahaq2_3995				(PF13347)
745277.Rahaq2_1120				(PF16485)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================