Effective results for Rahnella sp. Y9602 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 38 proteins (0 high, 38 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
741091.Rahaq_1366				(PF17101) (PF11380) (PF17102)	(mitochondrial)
741091.Rahaq_1364				(PF17101) (PF11380) (PF17102)	ER
741091.Rahaq_3163				(PF02112)	ER
741091.Rahaq_0586				(PF00959)	ER
741091.Rahaq_1289				(PF02415)	ER
741091.Rahaq_1484				(PF00959)	ER
741091.Rahaq_0722				(PF00959)	ER
741091.Rahaq_1797				(PF00959)	ER
741091.Rahaq_4220				(PF13332)	ER; (ER)
741091.Rahaq_2926				(PF02371)	(mitochondrial)
741091.Rahaq_2016				(PF02371)
741091.Rahaq_1402				(PF02371)
741091.Rahaq_2573				(PF13347)
741091.Rahaq_0580				(PF05929)
741091.Rahaq_3364				(PF02371)
741091.Rahaq_2696				(PF02371)
741091.Rahaq_3586				(PF02371)
741091.Rahaq_4218				(PF08950)
741091.Rahaq_1051				(PF16485)
741091.Rahaq_1075				(PF13347)
741091.Rahaq_2539				(PF05929)
741091.Rahaq_0536				(PF02371)
741091.Rahaq_1068				(PF13347)
741091.Rahaq_1478				(PF05929)
741091.Rahaq_1721				(PF13347)
741091.Rahaq_3708				(PF13347)
741091.Rahaq_3677				(PF10908)
741091.Rahaq_2291				(PF02371)
741091.Rahaq_4290				(PF13347)
741091.Rahaq_2930				(PF02371)
741091.Rahaq_4074				(PF13347)
741091.Rahaq_4073				(PF13347)
741091.Rahaq_1178				(PF13347)
741091.Rahaq_0099				(PF02371)
741091.Rahaq_2034				(PF13332)
741091.Rahaq_2031				(PF13332)
741091.Rahaq_2557				(PF10908)
741091.Rahaq_2946				(PF02371)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================