Effective results for Paenibacillus curdlanolyticus YK9 (eggnog40)

Summary

Number of putative secreted proteins: 144
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 35 eukaryotic-like domains, contained in 144 proteins (13 high, 131 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
717606.PaecuDRAFT_2080				PF03423 PF00686 (PF04450) (PF00754) (PF00041)	ER
717606.PaecuDRAFT_2082				PF03423 PF00686 (PF04450) (PF00754) (PF00041)	ER
717606.PaecuDRAFT_3054				(PF02055) (PF00395) (PF03422) (PF17189) (PF00041)	ER
717606.PaecuDRAFT_3514				(PF02018) (PF00395) (PF03422) (PF00754)	ER
717606.PaecuDRAFT_3044				(PF02018) (PF00395) (PF00754)	ER
717606.PaecuDRAFT_4662				(PF02018) (PF00395) (PF03422)	ER
717606.PaecuDRAFT_0919				(PF13290) (PF03422) (PF00754)	ER
717606.PaecuDRAFT_0918				(PF13290) (PF03422) (PF00754)	ER
717606.PaecuDRAFT_3020				(PF00395) (PF03422) (PF00041)	ER
717606.PaecuDRAFT_0954				(PF03442) (PF16990)	ER
717606.PaecuDRAFT_1686				(PF00754) (PF16990)	ER
717606.PaecuDRAFT_1684				(PF03714) (PF00395)	ER
717606.PaecuDRAFT_2403				(PF01833) PF03639	ER
717606.PaecuDRAFT_3045				(PF00754) PF03639	(mitochondrial); (ER)
717606.PaecuDRAFT_3464				(PF00754) PF03639	mitochondrial
717606.PaecuDRAFT_2320				(PF13290) (PF00395)	ER
717606.PaecuDRAFT_3055				(PF02055) (PF17189) (PF03422)	(ER)
717606.PaecuDRAFT_4265				PF03423 (PF00041)	ER
717606.PaecuDRAFT_3492				(PF13290) (PF00754) PF03639	(mitochondrial)
717606.PaecuDRAFT_0917				(PF13290) (PF03422)	ER
717606.PaecuDRAFT_3394				PF03423 (PF00041)	ER
717606.PaecuDRAFT_1386				(PF00754) (PF00041)	ER
717606.PaecuDRAFT_4384				(PF02055) (PF17189)	ER
717606.PaecuDRAFT_2469				(PF00395) (PF16990)	ER
717606.PaecuDRAFT_4391				(PF00395) (PF16990)	(ER)
717606.PaecuDRAFT_1855				PF03423 (PF00041)	ER
717606.PaecuDRAFT_1854				(PF03422) (PF00754)	ER
717606.PaecuDRAFT_0087				(PF00395) (PF00754)	ER
717606.PaecuDRAFT_3195				(PF01833) PF00686	(ER)
717606.PaecuDRAFT_4352				(PF02018) (PF00395)	ER
717606.PaecuDRAFT_2905				(PF00395) (PF00041)	ER
717606.PaecuDRAFT_1020				(PF00754) (PF16990)	ER
717606.PaecuDRAFT_4239				(PF00395) (PF00041)	ER
717606.PaecuDRAFT_0017				(PF00041)	ER
717606.PaecuDRAFT_1309				(PF00395)	ER
717606.PaecuDRAFT_1198				(PF09992)	mitochondrial; (mitochondrial)
717606.PaecuDRAFT_1199				(PF01833)	ER
717606.PaecuDRAFT_2531				(PF00395)	mitochondrial
717606.PaecuDRAFT_2628				(PF13276)	(mitochondrial)
717606.PaecuDRAFT_3688				(PF10067)	ER
717606.PaecuDRAFT_3465				(PF00754)	ER
717606.PaecuDRAFT_3466				(PF00754)	ER; (ER)
717606.PaecuDRAFT_4115				(PF00395)	(ER)
717606.PaecuDRAFT_3475				(PF00395)	ER
717606.PaecuDRAFT_4270				(PF10067)	ER
717606.PaecuDRAFT_2640				(PF00395)	mitochondrial; (mitochondrial)
717606.PaecuDRAFT_0379				(PF00395)	ER
717606.PaecuDRAFT_1420				(PF00395)	ER
717606.PaecuDRAFT_2049				(PF00754)	ER
717606.PaecuDRAFT_2605				(PF00395)	ER
717606.PaecuDRAFT_2603				(PF13276)	mitochondrial
717606.PaecuDRAFT_4605				PF00686	ER
717606.PaecuDRAFT_4044				(PF00395)	ER
717606.PaecuDRAFT_1668				(PF16657)	ER
717606.PaecuDRAFT_1722				(PF01833)	ER; (ER)
717606.PaecuDRAFT_2077				(PF00754)	mitochondrial
717606.PaecuDRAFT_4452				(PF00395)	ER
717606.PaecuDRAFT_3496				(PF00395)	ER
717606.PaecuDRAFT_3395				PF03423	(ER)
717606.PaecuDRAFT_4629				(PF01391)	ER
717606.PaecuDRAFT_2334				(PF00041)	ER
717606.PaecuDRAFT_2491				(PF09992)	ER
717606.PaecuDRAFT_2136				(PF00395)	ER
717606.PaecuDRAFT_2883				(PF03442)	ER
717606.PaecuDRAFT_1299				(PF00395)	mitochondrial; (mitochondrial)
717606.PaecuDRAFT_3722				(PF10067)	ER
717606.PaecuDRAFT_4344				(PF00041)	ER
717606.PaecuDRAFT_4345				(PF00041)	ER
717606.PaecuDRAFT_4346				(PF00041)	ER
717606.PaecuDRAFT_1823				(PF03422)	ER
717606.PaecuDRAFT_1824				(PF00395)	ER
717606.PaecuDRAFT_4193				(PF00395)	ER
717606.PaecuDRAFT_0981				PF03370	ER
717606.PaecuDRAFT_2903				(PF17189)	ER
717606.PaecuDRAFT_2584				(PF00754)	ER
717606.PaecuDRAFT_2582				(PF02333)	ER
717606.PaecuDRAFT_2583				(PF02333)	ER
717606.PaecuDRAFT_3968				(PF13276)	mitochondrial
717606.PaecuDRAFT_4037				(PF09992)	(mitochondrial); mitochondrial
717606.PaecuDRAFT_4038				(PF00395)	ER
717606.PaecuDRAFT_2552				(PF00395)	ER
717606.PaecuDRAFT_0514				(PF09992)	ER
717606.PaecuDRAFT_2915				(PF00395)	ER
717606.PaecuDRAFT_2913				(PF13276)	mitochondrial
717606.PaecuDRAFT_1335				(PF01391)	mitochondrial
717606.PaecuDRAFT_2570				(PF00395)	ER
717606.PaecuDRAFT_4303				(PF00395)	ER
717606.PaecuDRAFT_4013				(PF01833)	ER
717606.PaecuDRAFT_0846				(PF00041)	ER
717606.PaecuDRAFT_3933				(PF13276)	mitochondrial
717606.PaecuDRAFT_3207				(PF00395)	ER
717606.PaecuDRAFT_4644				(PF00395)	ER
717606.PaecuDRAFT_4665				(PF03318)	(plastid)
717606.PaecuDRAFT_4276				(PF02018)	(mitochondrial)
717606.PaecuDRAFT_4043				(PF00395)	(mitochondrial)
717606.PaecuDRAFT_1662				(PF03714) (PF00395)
717606.PaecuDRAFT_4379				(PF00041)	(ER)
717606.PaecuDRAFT_3037				(PF02055) (PF17189)
717606.PaecuDRAFT_3179				(PF08323)	(ER)
717606.PaecuDRAFT_0485				(PF01391)
717606.PaecuDRAFT_1190				(PF00395)
717606.PaecuDRAFT_3271				(PF00334)
717606.PaecuDRAFT_2318				(PF16657)
717606.PaecuDRAFT_4409				(PF00041)
717606.PaecuDRAFT_3918				(PF13276)
717606.PaecuDRAFT_4067				(PF00395)
717606.PaecuDRAFT_1365				(PF00334)
717606.PaecuDRAFT_4723				(PF09359)
717606.PaecuDRAFT_4279				(PF00041)
717606.PaecuDRAFT_2338				(PF13276)
717606.PaecuDRAFT_0906				(PF03538)
717606.PaecuDRAFT_0905				(PF12255)
717606.PaecuDRAFT_2848				(PF03422)
717606.PaecuDRAFT_1866				(PF09992)
717606.PaecuDRAFT_2446				(PF09359)
717606.PaecuDRAFT_0437				(PF16657)
717606.PaecuDRAFT_2497				(PF00707)
717606.PaecuDRAFT_4762				(PF01391)	not used
717606.PaecuDRAFT_4387				(PF03422)
717606.PaecuDRAFT_1285				(PF00707)
717606.PaecuDRAFT_2394				(PF09359)
717606.PaecuDRAFT_2465				(PF08670)
717606.PaecuDRAFT_2464				(PF08670)
717606.PaecuDRAFT_4397				(PF16657)
717606.PaecuDRAFT_0893				(PF00334)
717606.PaecuDRAFT_0074				(PF07247)
717606.PaecuDRAFT_4562				(PF13276)
717606.PaecuDRAFT_0713				(PF08323)
717606.PaecuDRAFT_0712				(PF08323)
717606.PaecuDRAFT_3194				(PF16657)
717606.PaecuDRAFT_0189				(PF17125)
717606.PaecuDRAFT_3185				(PF16657)
717606.PaecuDRAFT_4218				(PF16657)
717606.PaecuDRAFT_4321				(PF13276)
717606.PaecuDRAFT_0193				(PF17125)
717606.PaecuDRAFT_0682				(PF09992)
717606.PaecuDRAFT_2178				(PF13276)
717606.PaecuDRAFT_3424				(PF08323)
717606.PaecuDRAFT_0215				(PF09419)
717606.PaecuDRAFT_0034				(PF00395)
717606.PaecuDRAFT_4838				(PF17125)
717606.PaecuDRAFT_4306				(PF13276)
717606.PaecuDRAFT_4786				(PF01391)
717606.PaecuDRAFT_4225				(PF16804)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================