Metamenu

Effective results for Lactobacillus fermentum CECT 5716 (eggnog40)

Summary

Number of putative secreted proteins: 43
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 43 proteins (0 high, 43 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
712938.LC40_0654(PF13936) (PF00665)mitochondrial; (mitochondrial)
712938.LC40_0637(PF13936) (PF00665)mitochondrial; (mitochondrial)
712938.LC40_0278(PF00665)(mitochondrial)
712938.LC40_0079(PF00872)mitochondrial
712938.LC40_1093(PF00665)(mitochondrial)
712938.LC40_0730(PF03577)mitochondrial
712938.LC40_0753(PF13936) (PF00665)
712938.LC40_1133(PF13936) (PF00665)
712938.LC40_0911(PF13936) (PF00665)
712938.LC40_0705(PF13936) (PF00665)
712938.LC40_0995(PF13936) (PF00665)
712938.LC40_0941(PF00872)
712938.LC40_0940(PF00665)
712938.LC40_0065(PF00872)
712938.LC40_0937(PF00872)
712938.LC40_0935(PF00872)
712938.LC40_0938(PF00665)
712938.LC40_1127(PF00872)
712938.LC40_0791(PF00665)
712938.LC40_0652(PF03577)
712938.LC40_0470(PF00665)
712938.LC40_0277(PF00872)
712938.LC40_0465(PF00872)
712938.LC40_0759(PF00872)
712938.LC40_1139(PF00665)
712938.LC40_1138(PF00665)
712938.LC40_1137(PF00872)
712938.LC40_1132(PF00872)
712938.LC40_0784(PF00665)
712938.LC40_0789(PF00872)
712938.LC40_0913(PF00872)
712938.LC40_0914(PF00665)
712938.LC40_1102(PF00872)
712938.LC40_0520(PF00665)
712938.LC40_0775(PF13936)
712938.LC40_0676(PF00872)
712938.LC40_0679(PF00665)
712938.LC40_0455(PF00872)
712938.LC40_0454(PF00872)
712938.LC40_0992(PF00665)
712938.LC40_0993(PF00665)
712938.LC40_0996(PF00665)
712938.LC40_1116(PF03577)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================