Effective results for Coriobacterium glomerans PW2 (eggnog40)

Summary

Number of putative secreted proteins: 49
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 49 proteins (1 high, 48 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
700015.Corgl_0468				(PF05738)	ER
700015.Corgl_0255				(PF06541)	ER
700015.Corgl_1405				PF04103	(ER)
700015.Corgl_0566				(PF00359)	(mitochondrial)
700015.Corgl_1788				(PF05738)	mitochondrial
700015.Corgl_0151				(PF05738)	ER
700015.Corgl_0673				(PF00359)	(mitochondrial)
700015.Corgl_1534				(PF00359)	(mitochondrial)
700015.Corgl_0214				(PF05738)	(mitochondrial)
700015.Corgl_1691				(PF00359)	(mitochondrial)
700015.Corgl_0532				(PF00359)	(ER)
700015.Corgl_0250				(PF06541)
700015.Corgl_1033				(PF05738)
700015.Corgl_0480				(PF00359)
700015.Corgl_0933				(PF00359)
700015.Corgl_0912				(PF00834)
700015.Corgl_1173				(PF00359)
700015.Corgl_0237				(PF00359)
700015.Corgl_0334				(PF05738)
700015.Corgl_0210				(PF02873)
700015.Corgl_1616				(PF13204)
700015.Corgl_1765				(PF06541)
700015.Corgl_1528				(PF13240)
700015.Corgl_1526				(PF13240)
700015.Corgl_1525				(PF13240)
700015.Corgl_1447				(PF00359)
700015.Corgl_0110				(PF01116)
700015.Corgl_0111				(PF00359)
700015.Corgl_1574				(PF00359)
700015.Corgl_0672				(PF00359)
700015.Corgl_0569				(PF00834)
700015.Corgl_0763				(PF02873)
700015.Corgl_1560				(PF00359)
700015.Corgl_0414				(PF00359)
700015.Corgl_0419				(PF01116)
700015.Corgl_0951				(PF01116)
700015.Corgl_1557				(PF01116)
700015.Corgl_1593				(PF13204)
700015.Corgl_1687				(PF00359)
700015.Corgl_1111				(PF00359)
700015.Corgl_1604				(PF13204)
700015.Corgl_1518				(PF00359)
700015.Corgl_0295				(PF13240)
700015.Corgl_0500				(PF00359)
700015.Corgl_1277				(PF00359)
700015.Corgl_1231				(PF00834)
700015.Corgl_0612				(PF01116)
700015.Corgl_1493				(PF01116)
700015.Corgl_1709				(PF13240)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================