Effective results for Mahella australiensis 50-1 BON (eggnog40)

Summary

Number of putative secreted proteins: 65
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 65 proteins (33 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
697281.Mahau_1366				(PF02223)	(mitochondrial)
697281.Mahau_2034				(PF01116)	mitochondrial
697281.Mahau_0028				PF01208	(mitochondrial)
697281.Mahau_0147				(PF06165) (PF17167)
697281.Mahau_1339				PF01208	(mitochondrial)
697281.Mahau_1961				(PF06165) (PF17167)
697281.Mahau_1365				(PF02223)	(mitochondrial)
697281.Mahau_1109				(PF06165) (PF17167)
697281.Mahau_0396				(PF04041)	(mitochondrial)
697281.Mahau_0471				PF01208	(mitochondrial)
697281.Mahau_1673				(PF01116)	(mitochondrial)
697281.Mahau_1874				(PF06176)	(mitochondrial)
697281.Mahau_0032				PF01208
697281.Mahau_2672				PF01208
697281.Mahau_0818				(PF09861)
697281.Mahau_2768				PF01208
697281.Mahau_1536				PF01208
697281.Mahau_2948				PF01208
697281.Mahau_1207				(PF13204)
697281.Mahau_1208				PF01208
697281.Mahau_1209				PF01208
697281.Mahau_1780				(PF09861)
697281.Mahau_1785				(PF04041)
697281.Mahau_1309				(PF01116)
697281.Mahau_1013				(PF16760)
697281.Mahau_1770				(PF17132)
697281.Mahau_1771				PF01208
697281.Mahau_0169				(PF17132)
697281.Mahau_0767				PF01208
697281.Mahau_2857				PF01208
697281.Mahau_0975				PF02212
697281.Mahau_2689				PF01208
697281.Mahau_2685				PF01208
697281.Mahau_2593				(PF13204)
697281.Mahau_1819				PF01208
697281.Mahau_1760				PF01208
697281.Mahau_1811				(PF13204)
697281.Mahau_0210				PF01208
697281.Mahau_2697				PF01208
697281.Mahau_1377				(PF01116)
697281.Mahau_2859				PF01208
697281.Mahau_1340				PF01208
697281.Mahau_2253				PF01208
697281.Mahau_1296				PF01208
697281.Mahau_1121				(PF09419)
697281.Mahau_0728				PF01208
697281.Mahau_2006				PF05691
697281.Mahau_0254				(PF01116)
697281.Mahau_2706				(PF09861)
697281.Mahau_2707				(PF01116)
697281.Mahau_2288				PF01208
697281.Mahau_2282				PF01208
697281.Mahau_2290				PF01208
697281.Mahau_2725				PF01208
697281.Mahau_2342				(PF04041)
697281.Mahau_1676				(PF04041)
697281.Mahau_0365				(PF02223)
697281.Mahau_0823				(PF01116)
697281.Mahau_1791				(PF17132)
697281.Mahau_0627				(PF01991)
697281.Mahau_2968				PF01208
697281.Mahau_2080				PF01208
697281.Mahau_1686				PF06888
697281.Mahau_1687				(PF17132)
697281.Mahau_2229				(PF02943)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================