Metamenu

Effective results for Desulfovibrio africanus str. Walvis Bay (eggnog40)

Summary

Number of putative secreted proteins: 119
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 119 proteins (19 high, 100 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
690850.Desaf_0900PF10591 PF13202ER
690850.Desaf_0862(PF08448)(ER)
690850.Desaf_0455PF13202ER
690850.Desaf_0456(PF04187)ER
690850.Desaf_0872(PF08448)ER
690850.Desaf_3501(PF02010)ER
690850.Desaf_0428(PF00112)ER
690850.Desaf_1317(PF02516)ER
690850.Desaf_2003(PF06884)ER
690850.Desaf_2005(PF08448)ER
690850.Desaf_3420(PF13023)(mitochondrial)
690850.Desaf_3188(PF08448)(mitochondrial)
690850.Desaf_1296(PF08448)ER
690850.Desaf_2934(PF13023)(mitochondrial)
690850.Desaf_3374PF13202ER
690850.Desaf_3372PF13202ER
690850.Desaf_3373PF13202ER
690850.Desaf_2626PF13202ER
690850.Desaf_2365(PF08448)ER
690850.Desaf_2366(PF08448)ER; plastid
690850.Desaf_1100PF01591ER; (ER)
690850.Desaf_2557(PF08448)(ER)
690850.Desaf_2949(PF13524)ER
690850.Desaf_0283(PF00112)ER
690850.Desaf_0478(PF01326)ER; (ER)
690850.Desaf_0561PF13202ER
690850.Desaf_0562PF13202ER
690850.Desaf_0580(PF13187)mitochondrial
690850.Desaf_2188(PF08448)ER
690850.Desaf_2277(PF08448)(mitochondrial)
690850.Desaf_2278(PF08448)ER
690850.Desaf_0649PF13202ER
690850.Desaf_0648PF13202ER
690850.Desaf_0647PF13202ER
690850.Desaf_0646PF13202ER
690850.Desaf_0916PF13202ER
690850.Desaf_3594(PF08448)mitochondrial; (mitochondrial)
690850.Desaf_0651PF13202ER
690850.Desaf_3303(PF08448)ER
690850.Desaf_3302(PF08448)(ER); (mitochondrial)
690850.Desaf_3307(PF08448)ER
690850.Desaf_0799(PF13436)ER
690850.Desaf_3688(PF04187)ER
690850.Desaf_0938(PF13187)(mitochondrial)
690850.Desaf_1781(PF08448)ER
690850.Desaf_1032(PF13524)ER
690850.Desaf_0721(PF01326)(mitochondrial)
690850.Desaf_1453(PF09825)(ER)
690850.Desaf_2280(PF01326)(mitochondrial)
690850.Desaf_0960(PF08448)(mitochondrial)
690850.Desaf_1517(PF13524)(ER)
690850.Desaf_1354(PF13524)(ER)
690850.Desaf_1356(PF13524)(mitochondrial)
690850.Desaf_2333(PF08448)
690850.Desaf_1792(PF08448)
690850.Desaf_3337(PF01326)
690850.Desaf_0866(PF08448)
690850.Desaf_0301(PF08448)
690850.Desaf_0279(PF08448)
690850.Desaf_3537(PF08448)
690850.Desaf_1900(PF01258)
690850.Desaf_1867(PF04432)
690850.Desaf_1864(PF04432)
690850.Desaf_2747(PF08448)
690850.Desaf_1310(PF08448)
690850.Desaf_2599(PF08448)
690850.Desaf_0196(PF01258)
690850.Desaf_0350(PF13023)
690850.Desaf_1756(PF00301)not used
690850.Desaf_2765(PF13187)
690850.Desaf_2376(PF02943)
690850.Desaf_1660(PF08448)
690850.Desaf_1112(PF08448)
690850.Desaf_2026(PF08448)
690850.Desaf_0777(PF08448)
690850.Desaf_0773(PF00112)
690850.Desaf_0608(PF00301)
690850.Desaf_3397(PF08448)
690850.Desaf_1551(PF08448)
690850.Desaf_3800PF01697
690850.Desaf_2825(PF08448)
690850.Desaf_2545(PF08448)
690850.Desaf_3346(PF08448)
690850.Desaf_1705(PF01258)
690850.Desaf_1703(PF13187)
690850.Desaf_3122(PF10609)
690850.Desaf_1383(PF03522)
690850.Desaf_2946(PF01326)
690850.Desaf_2834PF16575
690850.Desaf_3717(PF13187)
690850.Desaf_3133(PF01326)
690850.Desaf_1570(PF01258)
690850.Desaf_0115(PF13187)
690850.Desaf_0368(PF08448)
690850.Desaf_0364(PF08448)
690850.Desaf_2660(PF00301)
690850.Desaf_1187(PF08448)
690850.Desaf_1186(PF08448)
690850.Desaf_0100(PF13187)
690850.Desaf_3586(PF08448)
690850.Desaf_1379(PF13187)
690850.Desaf_0009(PF13524)
690850.Desaf_2883(PF13187)
690850.Desaf_2506PF13202
690850.Desaf_2503(PF08448)
690850.Desaf_3305(PF10609)
690850.Desaf_3808(PF01258)
690850.Desaf_2879(PF04432)
690850.Desaf_0336(PF13187)
690850.Desaf_0339(PF13187)
690850.Desaf_0248(PF01258)
690850.Desaf_2400(PF13524)
690850.Desaf_0667(PF04218)
690850.Desaf_1355(PF13524)
690850.Desaf_1757(PF00301)
690850.Desaf_1816(PF00301)not used
690850.Desaf_1818(PF10609)
690850.Desaf_2124PF01697
690850.Desaf_0682(PF01258)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================