Effective results for Prevotella multisaccharivorax DSM 17128 (eggnog40)

Summary

Number of putative secreted proteins: 103
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 103 proteins (1 high, 102 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
688246.Premu_2319				(PF00728) (PF02838)	ER
688246.Premu_2368				(PF00728) (PF02838)	ER
688246.Premu_2369				(PF00728) (PF02838)	ER
688246.Premu_1033				(PF00728) (PF02838)	ER
688246.Premu_1562				(PF00728) (PF02838)	(ER)
688246.Premu_1828				(PF00728) (PF02838)	ER
688246.Premu_1829				(PF00728) (PF02838)	(mitochondrial); (plastid)
688246.Premu_0798				(PF02485)	(mitochondrial)
688246.Premu_0782				(PF03051)	(mitochondrial)
688246.Premu_0935				(PF00728) (PF02838)	ER
688246.Premu_0732				(PF03412)	(mitochondrial)
688246.Premu_2715				(PF07168)	ER
688246.Premu_0461				(PF13905)	ER
688246.Premu_0857				(PF13905)	ER
688246.Premu_0067				PF08017	(mitochondrial)
688246.Premu_1077				(PF03051)	ER
688246.Premu_0656				(PF00328)	ER
688246.Premu_0495				(PF00728) (PF02838)	(mitochondrial)
688246.Premu_1487				(PF12256)	ER
688246.Premu_2471				(PF00328)	ER
688246.Premu_2274				(PF13905)	ER
688246.Premu_2275				(PF13905)	ER
688246.Premu_2839				(PF02838)	ER
688246.Premu_0880				(PF00328)	ER
688246.Premu_0176				(PF14771)	ER
688246.Premu_0893				(PF02485)	(mitochondrial)
688246.Premu_1456				(PF01610)	(mitochondrial)
688246.Premu_1480				(PF12256)	(mitochondrial)
688246.Premu_0426				(PF00216)
688246.Premu_2034				(PF13155)
688246.Premu_2038				(PF03432)
688246.Premu_2492				(PF12762)
688246.Premu_1780				(PF13155)
688246.Premu_1783				(PF03432)
688246.Premu_0787				(PF00078)
688246.Premu_1508				(PF01624)
688246.Premu_2311				(PF00216)
688246.Premu_1799				(PF00078)
688246.Premu_1792				(PF03432)
688246.Premu_1795				(PF13155)
688246.Premu_1948				(PF01610)
688246.Premu_2764				(PF00216)
688246.Premu_1631				(PF03412)
688246.Premu_1635				(PF03412)
688246.Premu_0213				(PF00078)
688246.Premu_1403				(PF00078)
688246.Premu_1085				(PF01715)
688246.Premu_1532				(PF00216)
688246.Premu_1531				(PF00216)
688246.Premu_2568				(PF13155)
688246.Premu_1438				(PF13155)
688246.Premu_1435				(PF01610)
688246.Premu_1182				(PF00078)
688246.Premu_2516				(PF03412)
688246.Premu_1514				(PF00216)
688246.Premu_1425				(PF12762)
688246.Premu_2435				(PF03412)
688246.Premu_2237				(PF00216)
688246.Premu_1451				(PF12762)
688246.Premu_1511				(PF13155)
688246.Premu_0657				(PF01624)
688246.Premu_2407				(PF01610)
688246.Premu_2393				(PF03412)
688246.Premu_2083				(PF13155)
688246.Premu_2081				(PF01610)
688246.Premu_2086				(PF01624)
688246.Premu_1061				(PF00078)
688246.Premu_1442				(PF03432)
688246.Premu_1717				(PF13155)
688246.Premu_0530				(PF01610)
688246.Premu_1882				(PF01610)
688246.Premu_2520				(PF12762)
688246.Premu_2416				(PF12762)
688246.Premu_2098				(PF00078)
688246.Premu_1872				(PF00078)
688246.Premu_1474				(PF12256)	not used
688246.Premu_1499				(PF00078)
688246.Premu_0705				(PF00216)
688246.Premu_0836				(PF00078)
688246.Premu_1722				(PF03432)
688246.Premu_1001				(PF03051)
688246.Premu_2119				(PF01610)	not used
688246.Premu_0734				(PF01610)
688246.Premu_0289				(PF00078)
688246.Premu_2078				(PF00216)
688246.Premu_1743				(PF01715)
688246.Premu_1931				(PF03630)
688246.Premu_0199				(PF00078)
688246.Premu_0757				(PF13086)
688246.Premu_0579				(PF03412)
688246.Premu_2054				(PF01610)
688246.Premu_1909				(PF05693)
688246.Premu_2837				(PF16011)
688246.Premu_2833				(PF16314)
688246.Premu_2122				(PF01610)
688246.Premu_1169				(PF12762)
688246.Premu_1161				(PF00216)
688246.Premu_0564				(PF13086)
688246.Premu_2024				(PF01610)
688246.Premu_2029				(PF13086)
688246.Premu_2487				(PF12762)
688246.Premu_1598				(PF03432)
688246.Premu_1689				(PF00078)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================